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1W6K
Asym. Unit
Info
Asym.Unit (146 KB)
Biol.Unit 1 (141 KB)
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(1)
Title
:
STRUCTURE OF HUMAN OSC IN COMPLEX WITH LANOSTEROL
Authors
:
R. Thoma, T. Schulz-Gasch, B. D'Arcy, J. Benz, J. Aebi, H. Dehmlow, M. Hennig, A. Ruf
Date
:
19 Aug 04 (Deposition) - 29 Oct 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Cyclase, Cholesterol, Lanosterol, Monotopic Membrane Protein, B-Octyl-Glucoside, Isomerase, Steroid Biosynthesis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Thoma, T. Schulz-Gasch, B. D'Arcy, J. Benz, J. Aebi, H. Dehmlow, M. Hennig, M. Stihle, A. Ruf
Insight Into Steroid Scaffold Formation From The Structure Of Human Oxidosqualene Cyclase
Nature V. 432 118 2004
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(2, 9)
Info
All Hetero Components
1a: B-OCTYLGLUCOSIDE (BOGa)
1b: B-OCTYLGLUCOSIDE (BOGb)
1c: B-OCTYLGLUCOSIDE (BOGc)
1d: B-OCTYLGLUCOSIDE (BOGd)
1e: B-OCTYLGLUCOSIDE (BOGe)
1f: B-OCTYLGLUCOSIDE (BOGf)
1g: B-OCTYLGLUCOSIDE (BOGg)
1h: B-OCTYLGLUCOSIDE (BOGh)
2a: LANOSTEROL (LANa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BOG
8
Ligand/Ion
B-OCTYLGLUCOSIDE
2
LAN
1
Ligand/Ion
LANOSTEROL
[
close Hetero Component info
]
Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ALA A:298
BINDING SITE FOR RESIDUE BOG A1732
2
AC2
SOFTWARE
LEU A:274 , ARG A:277 , ASN A:301 , LEU A:302 , HIS A:305 , HIS A:306 , HOH A:2958 , HOH A:2959
BINDING SITE FOR RESIDUE BOG A1733
3
AC3
SOFTWARE
TRP A:291 , LEU A:511
BINDING SITE FOR RESIDUE BOG A1734
4
AC4
SOFTWARE
PRO A:288 , HIS A:289 , SER A:290 , TRP A:291 , ARG A:294 , BOG A:1737 , HOH A:2960 , HOH A:2961
BINDING SITE FOR RESIDUE BOG A1735
5
AC5
SOFTWARE
HIS A:306
BINDING SITE FOR RESIDUE BOG A1736
6
AC6
SOFTWARE
TRP A:291 , BOG A:1735
BINDING SITE FOR RESIDUE BOG A1737
7
AC7
SOFTWARE
MET A:215 , LEU A:515 , HOH A:2421
BINDING SITE FOR RESIDUE BOG A1739
8
AC8
SOFTWARE
TYR A:98 , TRP A:192 , TRP A:230 , HIS A:232 , TRP A:387 , PHE A:444 , ASP A:455 , THR A:502 , TYR A:503 , TRP A:581 , PHE A:696 , ASN A:697 , TYR A:704 , HOH A:2603 , HOH A:2814
BINDING SITE FOR RESIDUE LAN A1740
[
close Site info
]
SAPs(SNPs)/Variants
(5, 5)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_024648 (R175Q, chain A, )
2: VAR_052057 (H310R, chain A, )
3: VAR_052058 (R614W, chain A, )
4: VAR_021522 (V642V, chain A, )
5: VAR_052059 (P688L, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_024648
R
175
Q
ERG7_HUMAN
Polymorphism
2839158
A
R
175
Q
2
UniProt
VAR_052057
H
310
R
ERG7_HUMAN
Polymorphism
34115287
A
H
310
R
3
UniProt
VAR_052058
R
614
W
ERG7_HUMAN
Polymorphism
35785446
A
R
614
W
4
UniProt
VAR_021522
L
642
V
ERG7_HUMAN
Polymorphism
2254524
A
V
642
V
5
UniProt
VAR_052059
P
688
L
ERG7_HUMAN
Polymorphism
17293705
A
P
688
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: TERPENE_SYNTHASES (A:574-588)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TERPENE_SYNTHASES
PS01074
Terpene synthases signature.
ERG7_HUMAN
574-588
1
A:574-588
[
close PROSITE info
]
Exons
(21, 21)
Info
All Exons
Exon 1.1g (A:6-60 (gaps))
Exon 1.2a (A:61-107)
Exon 1.3b (A:107-143)
Exon 1.4 (A:143-184)
Exon 1.5 (A:184-216)
Exon 1.6 (A:216-261)
Exon 1.7 (A:262-298)
Exon 1.8 (A:298-337)
Exon 1.9 (A:338-370)
Exon 1.10 (A:370-379)
Exon 1.11 (A:380-398)
Exon 1.12 (A:399-422)
Exon 1.13 (A:423-439)
Exon 1.14 (A:440-489)
Exon 1.15 (A:490-522)
Exon 1.16 (A:522-557)
Exon 1.17b (A:557-579)
Exon 1.18 (A:579-606)
Exon 1.19a (A:606-663)
Exon 1.20c (A:663-689)
Exon 1.21d (A:690-732)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.1b/1.1g
02: Boundary 1.1g/1.2a
03: Boundary 1.2a/1.3b
04: Boundary 1.3b/1.4
05: Boundary 1.4/1.5
06: Boundary 1.5/1.6
07: Boundary 1.6/1.7
08: Boundary 1.7/1.8
09: Boundary 1.8/1.9
10: Boundary 1.9/1.10
11: Boundary 1.10/1.11
12: Boundary 1.11/1.12
13: Boundary 1.12/1.13
14: Boundary 1.13/1.14
15: Boundary 1.14/1.15
16: Boundary 1.15/1.16
17: Boundary 1.16/1.17b
18: Boundary 1.17b/1.18
19: Boundary 1.18/1.19a
20: Boundary 1.19a/1.20c
21: Boundary 1.20c/1.21d
22: Boundary 1.21d/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000397728
1b
ENSE00001894078
chr21:
47648736-47648646
91
ERG7_HUMAN
1-5
5
0
-
-
1.1g
ENST00000397728
1g
ENSE00001051162
chr21:
47648513-47648348
166
ERG7_HUMAN
5-60
56
1
A:6-60 (gaps)
55
1.2a
ENST00000397728
2a
ENSE00001051190
chr21:
47647604-47647466
139
ERG7_HUMAN
61-107
47
1
A:61-107
47
1.3b
ENST00000397728
3b
ENSE00001051172
chr21:
47642652-47642544
109
ERG7_HUMAN
107-143
37
1
A:107-143
37
1.4
ENST00000397728
4
ENSE00001051171
chr21:
47641889-47641768
122
ERG7_HUMAN
143-184
42
1
A:143-184
42
1.5
ENST00000397728
5
ENSE00001051153
chr21:
47639486-47639390
97
ERG7_HUMAN
184-216
33
1
A:184-216
33
1.6
ENST00000397728
6
ENSE00002168345
chr21:
47636438-47636303
136
ERG7_HUMAN
216-261
46
1
A:216-261
46
1.7
ENST00000397728
7
ENSE00001051176
chr21:
47635707-47635599
109
ERG7_HUMAN
262-298
37
1
A:262-298
37
1.8
ENST00000397728
8
ENSE00001051158
chr21:
47635212-47635094
119
ERG7_HUMAN
298-337
40
1
A:298-337
40
1.9
ENST00000397728
9
ENSE00001051181
chr21:
47633749-47633652
98
ERG7_HUMAN
338-370
33
1
A:338-370
33
1.10
ENST00000397728
10
ENSE00001296974
chr21:
47632966-47632939
28
ERG7_HUMAN
370-379
10
1
A:370-379
10
1.11
ENST00000397728
11
ENSE00001051175
chr21:
47630658-47630602
57
ERG7_HUMAN
380-398
19
1
A:380-398
19
1.12
ENST00000397728
12
ENSE00001051174
chr21:
47629539-47629468
72
ERG7_HUMAN
399-422
24
1
A:399-422
24
1.13
ENST00000397728
13
ENSE00001051179
chr21:
47628215-47628165
51
ERG7_HUMAN
423-439
17
1
A:423-439
17
1.14
ENST00000397728
14
ENSE00001285727
chr21:
47627491-47627342
150
ERG7_HUMAN
440-489
50
1
A:440-489
50
1.15
ENST00000397728
15
ENSE00001051185
chr21:
47626682-47626586
97
ERG7_HUMAN
490-522
33
1
A:490-522
33
1.16
ENST00000397728
16
ENSE00001051152
chr21:
47625855-47625750
106
ERG7_HUMAN
522-557
36
1
A:522-557
36
1.17b
ENST00000397728
17b
ENSE00001051183
chr21:
47616181-47616116
66
ERG7_HUMAN
557-579
23
1
A:557-579
23
1.18
ENST00000397728
18
ENSE00001051157
chr21:
47615670-47615590
81
ERG7_HUMAN
579-606
28
1
A:579-606
28
1.19a
ENST00000397728
19a
ENSE00001051167
chr21:
47614575-47614405
171
ERG7_HUMAN
606-663
58
1
A:606-663
58
1.20c
ENST00000397728
20c
ENSE00001051182
chr21:
47611873-47611795
79
ERG7_HUMAN
663-689
27
1
A:663-689
27
1.21d
ENST00000397728
21d
ENSE00001891108
chr21:
47611149-47609039
2111
ERG7_HUMAN
690-732
43
1
A:690-732
43
[
close EXON info
]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1w6ka1 (A:6-99,A:379-732)
1b: SCOP_d1w6ka2 (A:100-378)
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Folds
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
alpha/alpha toroid
(324)
Superfamily
:
Terpenoid cyclases/Protein prenyltransferases
(151)
Family
:
Terpene synthases
(18)
Protein domain
:
Lanosterol synthase
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1w6ka1
A:6-99,A:379-732
1b
d1w6ka2
A:100-378
[
close SCOP info
]
CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1w6kA02 (A:72-97,A:383-732)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Alpha/alpha barrel
(251)
Topology
:
Glycosyltransferase
(233)
Homologous Superfamily
:
[code=1.50.10.20, no name defined]
(105)
Human (Homo sapiens)
(23)
1a
1w6kA02
A:72-97,A:383-732
[
close CATH info
]
Pfam Domains
(1, 3)
Info
all PFAM domains
1a: PFAM_Prenyltrans_1w6kA01 (A:610-658)
1b: PFAM_Prenyltrans_1w6kA02 (A:610-658)
1c: PFAM_Prenyltrans_1w6kA03 (A:610-658)
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(
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(
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Organisms
(
)
(
)
Clan
:
6_Hairpin
(120)
Family
:
Prenyltrans
(49)
Homo sapiens (Human)
(7)
1a
Prenyltrans-1w6kA01
A:610-658
1b
Prenyltrans-1w6kA02
A:610-658
1c
Prenyltrans-1w6kA03
A:610-658
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Asymmetric Unit 1
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Asym.Unit (146 KB)
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