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1W6C
Biol. Unit 1
Info
Asym.Unit (193 KB)
Biol.Unit 1 (369 KB)
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(1)
Title
:
AGAO HOLOENZYME IN A SMALL CELL, AT 2.2 ANGSTROMS
Authors
:
A. P. Duff, D. B. Langley, G. A. Juda, E. M. Shepard, D. M. Dooley, H. C. Fre J. M. Guss
Date
:
17 Aug 04 (Deposition) - 08 Dec 05 (Release) - 07 Aug 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Oxidoreductase, Amine Oxidase, Copper Containing, Metal-Binding, Tpq, Quinone, Holoenzyme
(Keyword Search:
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)
Reference
:
D. B. Langley, A. P. Duff, H. C. Freeman, J. M. Guss
The Copper Containing Amine Oxidase From Arthrobacter Globiformis: Refinement At 1. 55 And 2. 20 A Resolution In Two Crystal Forms.
Acta Crystallogr. , Sect. F V. 62 1052 2006
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: COPPER (II) ION (CUa)
1b: COPPER (II) ION (CUb)
2a: SODIUM ION (NAa)
3a: 5-(2-CARBOXY-2-AMINOETHYL)-2-HYDRO... (TPQa)
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No.
Name
Count
Type
Full Name
1
CU
-1
Ligand/Ion
COPPER (II) ION
2
NA
-1
Ligand/Ion
SODIUM ION
3
TPQ
2
Mod. Amino Acid
5-(2-CARBOXY-2-AMINOETHYL)-2-HYDROXY-1,4-BENZOQUINONE
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:431 , HIS A:433 , HIS A:592 , HOH A:2081
BINDING SITE FOR RESIDUE CU A 701
2
AC2
SOFTWARE
ASP A:161 , ASP A:165 , HIS A:170 , HIS A:201
BINDING SITE FOR RESIDUE CU A 702
3
AC3
SOFTWARE
ASP A:440 , MET A:441 , ASP A:581 , ILE A:582 , HOH A:2085
BINDING SITE FOR RESIDUE NA A 703
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: COPPER_AMINE_OXID_1 (A:371-384)
2: COPPER_AMINE_OXID_2 (A:587-600)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
COPPER_AMINE_OXID_1
PS01164
Copper amine oxidase topaquinone signature.
PAOX_ARTGO
371-384
2
A:371-384
2
COPPER_AMINE_OXID_2
PS01165
Copper amine oxidase copper-binding site signature.
PAOX_ARTGO
587-600
2
A:587-600
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Exons
(0, 0)
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SCOP Domains
(2, 3)
Info
All SCOP Domains
1a: SCOP_d1w6ca1 (A:212-628)
2a: SCOP_d1w6ca2 (A:9-96)
2b: SCOP_d1w6ca3 (A:97-211)
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Organisms
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(
)
Class
:
All beta proteins
(24004)
Fold
:
Supersandwich
(271)
Superfamily
:
Amine oxidase catalytic domain
(65)
Family
:
Amine oxidase catalytic domain
(65)
Protein domain
:
Copper amine oxidase, domain 3
(62)
Arthrobacter globiformis [TaxId: 1665]
(40)
1a
d1w6ca1
A:212-628
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Cystatin-like
(403)
Superfamily
:
Amine oxidase N-terminal region
(65)
Family
:
Amine oxidase N-terminal region
(65)
Protein domain
:
Copper amine oxidase, domains 1 and 2
(62)
Arthrobacter globiformis [TaxId: 1665]
(40)
2a
d1w6ca2
A:9-96
2b
d1w6ca3
A:97-211
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CATH Domains
(2, 3)
Info
all CATH domains
1a: CATH_1w6cA02 (A:102-203)
1b: CATH_1w6cA01 (A:9-95)
2a: CATH_1w6cA03 (A:204-627)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Nuclear Transport Factor 2; Chain: A,
(517)
Homologous Superfamily
:
[code=3.10.450.40, no name defined]
(77)
Arthrobacter globiformis. Organism_taxid: 1665.
(34)
1a
1w6cA02
A:102-203
1b
1w6cA01
A:9-95
Class
:
Mainly Beta
(13760)
Architecture
:
Distorted Sandwich
(506)
Topology
:
Beta-galactosidase; Chain A, domain 5
(250)
Homologous Superfamily
:
Copper amine oxidase, Domain 3
(74)
Arthrobacter globiformis. Organism_taxid: 1665.
(34)
2a
1w6cA03
A:204-627
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_Cu_amine_oxidN3_1w6cA01 (A:98-198)
2a: PFAM_Cu_amine_oxid_1w6cA02 (A:219-628)
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Clan
:
CuAO_N2_N3
(40)
Family
:
Cu_amine_oxidN3
(37)
Arthrobacter globiformis
(13)
1a
Cu_amine_oxidN3-1w6cA01
A:98-198
Clan
:
no clan defined [family: Cu_amine_oxid]
(40)
Family
:
Cu_amine_oxid
(40)
Arthrobacter globiformis
(13)
2a
Cu_amine_oxid-1w6cA02
A:219-628
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