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1W5Z
Biol. Unit 1
Info
Asym.Unit (203 KB)
Biol.Unit 1 (387 KB)
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(1)
Title
:
AGAO COVALENT COMPLEX WITH BENZYLHYDRAZINE
Authors
:
A. P. Duff, D. M. Trambaiolo, D. B. Langley, G. A. Juda, E. M. Shepard, D. M H. C. Freeman, J. M. Guss
Date
:
11 Aug 04 (Deposition) - 08 Dec 05 (Release) - 07 Aug 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.86
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Amine Oxidase, Arthrobacter Globiformis, Copper Containing, Metal-Binding, Oxidoreductase, Tpq, Quinone, Inhibited, Bh, Benzylhydrazine, 3Ty
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. B. Langley, D. M. Trambaiolo, A. P. Duff, D. M. Dooley, H. C. Freeman, J. M. Guss
Complexes Of The Copper-Containing Amine Oxidase From Arthrobacter Globiformis With The Inhibitors Benzylhydrazine And Tranylcypromine.
Acta Crystallogr. , Sect. F V. 64 577 2008
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Hetero Components
(3, 18)
Info
All Hetero Components
1a: 3-[(3E)-3-(BENZYLHYDRAZONO)-4-HYDR... (3TYa)
2a: COPPER (II) ION (CUa)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
4a: SODIUM ION (NAa)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
View:
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Label:
No.
Name
Count
Type
Full Name
1
3TY
2
Mod. Amino Acid
3-[(3E)-3-(BENZYLHYDRAZONO)-4-HYDROXY-6-OXOCYCLOHEXA-1,4-DIEN-1-YL]-L-ALANINE
2
CU
-1
Ligand/Ion
COPPER (II) ION
3
GOL
10
Ligand/Ion
GLYCEROL
4
NA
-1
Ligand/Ion
SODIUM ION
5
SO4
6
Ligand/Ion
SULFATE ION
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:431 , HIS A:433 , HIS A:592 , HOH A:2301 , HOH A:2468
BINDING SITE FOR RESIDUE CU A 701
02
AC2
SOFTWARE
ASP A:440 , MET A:441 , ASP A:581 , ILE A:582 , HOH A:2340
BINDING SITE FOR RESIDUE NA A 703
03
AC3
SOFTWARE
ASP A:316 , CYS A:317 , LEU A:318 , GLY A:350 , ARG A:367 , HOH A:2303 , HOH A:2495 , HOH A:2496 , HOH A:2497
BINDING SITE FOR RESIDUE SO4 A 721
04
AC4
SOFTWARE
ASP A:549 , ARG A:551
BINDING SITE FOR RESIDUE SO4 A 722
05
AC5
SOFTWARE
THR A:233 , GLY A:234 , HOH A:2498
BINDING SITE FOR RESIDUE SO4 A 723
06
AC6
SOFTWARE
ARG A:532 , ARG A:533 , THR A:554 , PHE A:557 , HIS A:561 , SER A:562 , GLY A:563 , GLY A:564 , ALA A:565 , HOH A:2435
BINDING SITE FOR RESIDUE GOL A 751
07
AC7
SOFTWARE
ASN A:126 , ASP A:161 , VAL A:197 , ALA A:199 , HOH A:2499 , HOH A:2500 , HOH A:2501
BINDING SITE FOR RESIDUE GOL A 752
08
AC8
SOFTWARE
LEU A:209 , THR A:210 , SER A:620 , PRO A:621 , VAL A:622 , LEU A:623 , ASP A:624 , HOH A:2487 , HOH A:2502
BINDING SITE FOR RESIDUE GOL A 753
09
AC9
SOFTWARE
LEU A:590 , ASP A:605 , THR A:606 , LYS A:610 , ARG A:612 , HOH A:2503
BINDING SITE FOR RESIDUE GOL A 754
10
BC1
SOFTWARE
ASP A:444 , GLY A:445 , PHE A:446 , THR A:447 , ASN A:499
BINDING SITE FOR RESIDUE GOL A 755
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: COPPER_AMINE_OXID_1 (A:371-384)
2: COPPER_AMINE_OXID_2 (A:587-600)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
COPPER_AMINE_OXID_1
PS01164
Copper amine oxidase topaquinone signature.
PAOX_ARTGO
371-384
2
A:371-384
2
COPPER_AMINE_OXID_2
PS01165
Copper amine oxidase copper-binding site signature.
PAOX_ARTGO
587-600
2
A:587-600
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 3)
Info
All SCOP Domains
1a: SCOP_d1w5za1 (A:212-627)
2a: SCOP_d1w5za2 (A:9-96)
2b: SCOP_d1w5za3 (A:97-211)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Supersandwich
(271)
Superfamily
:
Amine oxidase catalytic domain
(65)
Family
:
Amine oxidase catalytic domain
(65)
Protein domain
:
Copper amine oxidase, domain 3
(62)
Arthrobacter globiformis [TaxId: 1665]
(40)
1a
d1w5za1
A:212-627
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Cystatin-like
(403)
Superfamily
:
Amine oxidase N-terminal region
(65)
Family
:
Amine oxidase N-terminal region
(65)
Protein domain
:
Copper amine oxidase, domains 1 and 2
(62)
Arthrobacter globiformis [TaxId: 1665]
(40)
2a
d1w5za2
A:9-96
2b
d1w5za3
A:97-211
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CATH Domains
(2, 3)
Info
all CATH domains
1a: CATH_1w5zA02 (A:102-203)
1b: CATH_1w5zA01 (A:9-95)
2a: CATH_1w5zA03 (A:204-627)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Nuclear Transport Factor 2; Chain: A,
(517)
Homologous Superfamily
:
[code=3.10.450.40, no name defined]
(77)
Arthrobacter globiformis. Organism_taxid: 1665.
(34)
1a
1w5zA02
A:102-203
1b
1w5zA01
A:9-95
Class
:
Mainly Beta
(13760)
Architecture
:
Distorted Sandwich
(506)
Topology
:
Beta-galactosidase; Chain A, domain 5
(250)
Homologous Superfamily
:
Copper amine oxidase, Domain 3
(74)
Arthrobacter globiformis. Organism_taxid: 1665.
(34)
2a
1w5zA03
A:204-627
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_Cu_amine_oxidN3_1w5zA01 (A:98-198)
2a: PFAM_Cu_amine_oxid_1w5zA02 (A:219-629)
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Clan
:
CuAO_N2_N3
(40)
Family
:
Cu_amine_oxidN3
(37)
Arthrobacter globiformis
(13)
1a
Cu_amine_oxidN3-1w5zA01
A:98-198
Clan
:
no clan defined [family: Cu_amine_oxid]
(40)
Family
:
Cu_amine_oxid
(40)
Arthrobacter globiformis
(13)
2a
Cu_amine_oxid-1w5zA02
A:219-629
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Asym.Unit (203 KB)
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