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1W5Z
Asym. Unit
Info
Asym.Unit (203 KB)
Biol.Unit 1 (387 KB)
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(1)
Title
:
AGAO COVALENT COMPLEX WITH BENZYLHYDRAZINE
Authors
:
A. P. Duff, D. M. Trambaiolo, D. B. Langley, G. A. Juda, E. M. Shepard, D. M H. C. Freeman, J. M. Guss
Date
:
11 Aug 04 (Deposition) - 08 Dec 05 (Release) - 07 Aug 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.86
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Amine Oxidase, Arthrobacter Globiformis, Copper Containing, Metal-Binding, Oxidoreductase, Tpq, Quinone, Inhibited, Bh, Benzylhydrazine, 3Ty
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
D. B. Langley, D. M. Trambaiolo, A. P. Duff, D. M. Dooley, H. C. Freeman, J. M. Guss
Complexes Of The Copper-Containing Amine Oxidase From Arthrobacter Globiformis With The Inhibitors Benzylhydrazine And Tranylcypromine.
Acta Crystallogr. , Sect. F V. 64 577 2008
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Hetero Components
(5, 11)
Info
All Hetero Components
1a: 3-[(3E)-3-(BENZYLHYDRAZONO)-4-HYDR... (3TYa)
2a: COPPER (II) ION (CUa)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
4a: SODIUM ION (NAa)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
View:
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Label:
No.
Name
Count
Type
Full Name
1
3TY
1
Mod. Amino Acid
3-[(3E)-3-(BENZYLHYDRAZONO)-4-HYDROXY-6-OXOCYCLOHEXA-1,4-DIEN-1-YL]-L-ALANINE
2
CU
1
Ligand/Ion
COPPER (II) ION
3
GOL
5
Ligand/Ion
GLYCEROL
4
NA
1
Ligand/Ion
SODIUM ION
5
SO4
3
Ligand/Ion
SULFATE ION
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:431 , HIS A:433 , HIS A:592 , HOH A:2301 , HOH A:2468
BINDING SITE FOR RESIDUE CU A 701
02
AC2
SOFTWARE
ASP A:440 , MET A:441 , ASP A:581 , ILE A:582 , HOH A:2340
BINDING SITE FOR RESIDUE NA A 703
03
AC3
SOFTWARE
ASP A:316 , CYS A:317 , LEU A:318 , GLY A:350 , ARG A:367 , HOH A:2303 , HOH A:2495 , HOH A:2496 , HOH A:2497
BINDING SITE FOR RESIDUE SO4 A 721
04
AC4
SOFTWARE
ASP A:549 , ARG A:551
BINDING SITE FOR RESIDUE SO4 A 722
05
AC5
SOFTWARE
THR A:233 , GLY A:234 , HOH A:2498
BINDING SITE FOR RESIDUE SO4 A 723
06
AC6
SOFTWARE
ARG A:532 , ARG A:533 , THR A:554 , PHE A:557 , HIS A:561 , SER A:562 , GLY A:563 , GLY A:564 , ALA A:565 , HOH A:2435
BINDING SITE FOR RESIDUE GOL A 751
07
AC7
SOFTWARE
ASN A:126 , ASP A:161 , VAL A:197 , ALA A:199 , HOH A:2499 , HOH A:2500 , HOH A:2501
BINDING SITE FOR RESIDUE GOL A 752
08
AC8
SOFTWARE
LEU A:209 , THR A:210 , SER A:620 , PRO A:621 , VAL A:622 , LEU A:623 , ASP A:624 , HOH A:2487 , HOH A:2502
BINDING SITE FOR RESIDUE GOL A 753
09
AC9
SOFTWARE
LEU A:590 , ASP A:605 , THR A:606 , LYS A:610 , ARG A:612 , HOH A:2503
BINDING SITE FOR RESIDUE GOL A 754
10
BC1
SOFTWARE
ASP A:444 , GLY A:445 , PHE A:446 , THR A:447 , ASN A:499
BINDING SITE FOR RESIDUE GOL A 755
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: COPPER_AMINE_OXID_1 (A:371-384)
2: COPPER_AMINE_OXID_2 (A:587-600)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
COPPER_AMINE_OXID_1
PS01164
Copper amine oxidase topaquinone signature.
PAOX_ARTGO
371-384
1
A:371-384
2
COPPER_AMINE_OXID_2
PS01165
Copper amine oxidase copper-binding site signature.
PAOX_ARTGO
587-600
1
A:587-600
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 3)
Info
All SCOP Domains
1a: SCOP_d1w5za1 (A:212-627)
2a: SCOP_d1w5za2 (A:9-96)
2b: SCOP_d1w5za3 (A:97-211)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Supersandwich
(271)
Superfamily
:
Amine oxidase catalytic domain
(65)
Family
:
Amine oxidase catalytic domain
(65)
Protein domain
:
Copper amine oxidase, domain 3
(62)
Arthrobacter globiformis [TaxId: 1665]
(40)
1a
d1w5za1
A:212-627
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Cystatin-like
(403)
Superfamily
:
Amine oxidase N-terminal region
(65)
Family
:
Amine oxidase N-terminal region
(65)
Protein domain
:
Copper amine oxidase, domains 1 and 2
(62)
Arthrobacter globiformis [TaxId: 1665]
(40)
2a
d1w5za2
A:9-96
2b
d1w5za3
A:97-211
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CATH Domains
(2, 3)
Info
all CATH domains
1a: CATH_1w5zA02 (A:102-203)
1b: CATH_1w5zA01 (A:9-95)
2a: CATH_1w5zA03 (A:204-627)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Nuclear Transport Factor 2; Chain: A,
(517)
Homologous Superfamily
:
[code=3.10.450.40, no name defined]
(77)
Arthrobacter globiformis. Organism_taxid: 1665.
(34)
1a
1w5zA02
A:102-203
1b
1w5zA01
A:9-95
Class
:
Mainly Beta
(13760)
Architecture
:
Distorted Sandwich
(506)
Topology
:
Beta-galactosidase; Chain A, domain 5
(250)
Homologous Superfamily
:
Copper amine oxidase, Domain 3
(74)
Arthrobacter globiformis. Organism_taxid: 1665.
(34)
2a
1w5zA03
A:204-627
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_Cu_amine_oxidN3_1w5zA01 (A:98-198)
2a: PFAM_Cu_amine_oxid_1w5zA02 (A:219-629)
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Clan
:
CuAO_N2_N3
(40)
Family
:
Cu_amine_oxidN3
(37)
Arthrobacter globiformis
(13)
1a
Cu_amine_oxidN3-1w5zA01
A:98-198
Clan
:
no clan defined [family: Cu_amine_oxid]
(40)
Family
:
Cu_amine_oxid
(40)
Arthrobacter globiformis
(13)
2a
Cu_amine_oxid-1w5zA02
A:219-629
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Asymmetric Unit 1
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