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1W5Y
Asym. Unit
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Asym.Unit (41 KB)
Biol.Unit 1 (35 KB)
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(1)
Title
:
HIV-1 PROTEASE IN COMPLEX WITH FLUORO SUBSTITUTED DIOL-BASED C2-SYMMETRIC INHIBITOR
Authors
:
J. Lindberg, D. Pyring, S. Loewgren, A. Rosenquist, G. Zuccarello, I. Kvarnstroem, H. Zhang, L. Vrang, B. Claesson, A. Hallberg, B. Samuelsson, T. Unge
Date
:
10 Aug 04 (Deposition) - 07 Oct 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Hydrolase/Hydrolase Inhibitor, Hydrolase, Dimer, Protein-Inhibitor Complex
(Keyword Search:
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Reference
:
J. Lindberg, D. Pyring, S. Loewgren, A. Rosenquist, G. Zuccarello, I. Kvarnstroem, H. Zhang, L. Vrang, B. Claesson, A. Hallberg, B. Samuelsson, T. Unge
Symmetric Fluoro-Substituted Diol-Based Hiv Protease Inhibitors. Ortho-Fluorinated And Meta-Fluorinated P1/P1'-Benzyloxy Side Groups Significantly Improve The Antiviral Activity And Preserve Binding Efficacy
Eur. J. Biochem. V. 271 4594 2004
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: (2R,3R,4R,5R)-2,5-BIS[(2,5-DIFLUOR... (BE6a)
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No.
Name
Count
Type
Full Name
1
BE6
1
Ligand/Ion
(2R,3R,4R,5R)-2,5-BIS[(2,5-DIFLUOROBENZYL)OXY]-3,4-DIHYDROXY-N,N'-BIS[(1S,2R)-2-HYDROXY-2,3-DIHYDRO-1H-INDEN-1-YL]HEXANEDIAMIDE
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Sites
(1, 1)
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1: AC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:8 , LEU A:23 , ASP A:25 , GLY A:27 , ALA A:28 , ASP A:29 , ASP A:30 , GLY A:48 , GLY A:49 , ILE A:50 , PRO A:81 , VAL A:82 , ILE A:84 , HOH A:2043 , ARG B:8 , LEU B:23 , ASP B:25 , GLY B:27 , ALA B:28 , ASP B:29 , ASP B:30 , VAL B:32 , GLY B:48 , GLY B:49 , ILE B:50 , ILE B:84
BINDING SITE FOR RESIDUE BE6 A1100
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(2, 4)
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1: ASP_PROT_RETROV (A:20-89,B:20-89)
2: ASP_PROTEASE (A:22-33,B:22-33)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ASP_PROT_RETROV
PS50175
Aspartyl protease, retroviral-type family profile.
POL_HV1B1
520-589
2
A:20-89
B:20-89
2
ASP_PROTEASE
PS00141
Eukaryotic and viral aspartyl proteases active site.
POL_HV1B1
522-533
2
A:22-33
B:22-33
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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1a: SCOP_d1w5ya_ (A:)
1b: SCOP_d1w5yb_ (B:)
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Class
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All beta proteins
(24004)
Fold
:
Acid proteases
(1120)
Superfamily
:
Acid proteases
(1120)
Family
:
Retroviral protease (retropepsin)
(591)
Protein domain
:
Human immunodeficiency virus type 1 protease
(514)
Human immunodeficiency virus type 1 [TaxId: 11676]
(424)
1a
d1w5ya_
A:
1b
d1w5yb_
B:
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CATH Domains
(1, 2)
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all CATH domains
1a: CATH_1w5yA00 (A:1-99)
1b: CATH_1w5yB00 (B:1-99)
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Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Cathepsin D, subunit A; domain 1
(745)
Homologous Superfamily
:
Acid Proteases
(745)
Hiv-1 (Human immunodeficiency virus)
(4)
1a
1w5yA00
A:1-99
1b
1w5yB00
B:1-99
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Pfam Domains
(1, 2)
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all PFAM domains
1a: PFAM_RVP_1w5yB01 (B:4-98)
1b: PFAM_RVP_1w5yB02 (B:4-98)
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Clan
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Peptidase_AA
(368)
Family
:
RVP
(212)
Human immunodeficiency virus type 1 group M subtype B (isolate BH10) (HIV-1)
(27)
1a
RVP-1w5yB01
B:4-98
1b
RVP-1w5yB02
B:4-98
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Asymmetric Unit 1
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Asym.Unit (41 KB)
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