PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1W5E
Asym. Unit
Info
Asym.Unit (478 KB)
Biol.Unit 1 (58 KB)
Biol.Unit 2 (57 KB)
Biol.Unit 3 (58 KB)
Biol.Unit 4 (58 KB)
Biol.Unit 5 (58 KB)
Biol.Unit 6 (59 KB)
Biol.Unit 7 (58 KB)
Biol.Unit 8 (58 KB)
Biol.Unit 9 (59 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
FTSZ W319Y MUTANT, P1 (M. JANNASCHII)
Authors
:
M. A. Oliva, S. C. Cordell, J. Lowe
Date
:
06 Aug 04 (Deposition) - 01 Dec 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Biol. Unit 7: G (1x)
Biol. Unit 8: H (1x)
Biol. Unit 9: I (1x)
Keywords
:
Cell Division, Cell-Division Protein, Complete Proteome, Gtp-Binding, Multigene Family, Septation, Tubulin, Ftsz, Filament, Z-Ring, Gtpase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. A. Oliva, S. C. Cordell, J. Lowe
Structural Insights Into Ftsz Protofilament Formation
Nat. Struct. Mol. Biol. V. 11 1243 2004
[
close entry info
]
Hetero Components
(1, 9)
Info
All Hetero Components
1a: GUANOSINE-5'-TRIPHOSPHATE (GTPa)
1b: GUANOSINE-5'-TRIPHOSPHATE (GTPb)
1c: GUANOSINE-5'-TRIPHOSPHATE (GTPc)
1d: GUANOSINE-5'-TRIPHOSPHATE (GTPd)
1e: GUANOSINE-5'-TRIPHOSPHATE (GTPe)
1f: GUANOSINE-5'-TRIPHOSPHATE (GTPf)
1g: GUANOSINE-5'-TRIPHOSPHATE (GTPg)
1h: GUANOSINE-5'-TRIPHOSPHATE (GTPh)
1i: GUANOSINE-5'-TRIPHOSPHATE (GTPi)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GTP
9
Ligand/Ion
GUANOSINE-5'-TRIPHOSPHATE
[
close Hetero Component info
]
Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:46 , GLY A:47 , ALA A:48 , GLY A:96 , ALA A:97 , GLY A:98 , GLY A:99 , GLY A:130 , GLY A:133 , GLY A:134 , THR A:135 , GLY A:136 , GLU A:165 , ARG A:169 , PHE A:208 , ALA A:211 , ASP A:212 , HOH A:2029 , HOH A:2074 , HOH A:2076
BINDING SITE FOR RESIDUE GTP A 500
2
AC2
SOFTWARE
GLY B:46 , GLY B:47 , ALA B:48 , GLY B:96 , ALA B:97 , GLY B:98 , GLY B:99 , GLY B:130 , LEU B:131 , GLY B:133 , GLY B:134 , THR B:135 , GLY B:136 , GLU B:165 , ARG B:169 , PHE B:208 , ALA B:211 , ASP B:212 , HOH B:2012 , HOH B:2013
BINDING SITE FOR RESIDUE GTP B 500
3
AC3
SOFTWARE
GLY C:46 , GLY C:47 , ALA C:48 , ALA C:97 , GLY C:99 , GLY C:130 , LEU C:131 , GLY C:133 , GLY C:134 , THR C:135 , GLY C:136 , PRO C:161 , GLU C:165 , ARG C:169 , PHE C:208 , ALA C:211 , ASP C:212 , HOH C:2030 , HOH C:2031 , HOH C:2035
BINDING SITE FOR RESIDUE GTP C 500
4
AC4
SOFTWARE
GLY D:46 , GLY D:47 , ALA D:48 , ASN D:51 , ALA D:97 , GLY D:98 , GLY D:99 , GLY D:130 , LEU D:131 , GLY D:133 , GLY D:134 , THR D:135 , GLY D:136 , GLU D:165 , ARG D:169 , PHE D:208 , ALA D:211 , ASP D:212 , HOH D:2023 , HOH D:2027 , HOH D:2028 , HOH D:2029 , HOH D:2079
BINDING SITE FOR RESIDUE GTP D 500
5
AC5
SOFTWARE
GLY E:46 , GLY E:47 , ALA E:48 , ALA E:97 , GLY E:99 , GLY E:130 , LEU E:131 , GLY E:133 , GLY E:134 , THR E:135 , GLY E:136 , GLU E:165 , ARG E:169 , PHE E:208 , ALA E:211 , ASP E:212 , HOH E:2015 , HOH E:2016 , HOH E:2017 , HOH E:2052
BINDING SITE FOR RESIDUE GTP E 500
6
AC6
SOFTWARE
GLY F:46 , GLY F:47 , ALA F:48 , ALA F:97 , GLY F:99 , GLY F:130 , LEU F:131 , GLY F:133 , GLY F:134 , THR F:135 , GLY F:136 , GLU F:165 , ARG F:169 , PHE F:208 , ALA F:211 , ASP F:212 , HOH F:2034 , HOH F:2087
BINDING SITE FOR RESIDUE GTP F 500
7
AC7
SOFTWARE
GLY G:46 , GLY G:47 , ALA G:48 , ASN G:51 , GLY G:96 , ALA G:97 , GLY G:98 , GLY G:99 , GLY G:130 , GLY G:133 , GLY G:134 , THR G:135 , GLY G:136 , GLU G:165 , ARG G:169 , PHE G:208 , ALA G:211 , ASP G:212 , HOH G:2079
BINDING SITE FOR RESIDUE GTP G 500
8
AC8
SOFTWARE
GLY H:46 , GLY H:47 , ALA H:48 , GLY H:96 , ALA H:97 , GLY H:98 , GLY H:99 , GLY H:130 , LEU H:131 , GLY H:133 , GLY H:134 , THR H:135 , GLY H:136 , GLU H:165 , ARG H:169 , PHE H:208 , ALA H:211 , ASP H:212 , HOH H:2011 , HOH H:2024
BINDING SITE FOR RESIDUE GTP H 500
9
AC9
SOFTWARE
GLY I:46 , GLY I:47 , ALA I:48 , GLY I:96 , ALA I:97 , GLY I:98 , GLY I:99 , GLY I:130 , LEU I:131 , GLY I:133 , GLY I:134 , THR I:135 , GLY I:136 , GLU I:165 , ARG I:169 , PHE I:208 , ALA I:211 , ASP I:212 , HOH I:2052
BINDING SITE FOR RESIDUE GTP I 500
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 18)
Info
All PROSITE Patterns/Profiles
1: FTSZ_1 (A:70-104,B:70-104,C:70-104,D:70-10...)
2: FTSZ_2 (A:123-144,B:123-144,C:123-144,D:12...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FTSZ_1
PS01134
FtsZ protein signature 1.
FTSZ1_METJA
70-104
9
A:70-104
B:70-104
C:70-104
D:70-104
E:70-104
F:70-104
G:70-104
H:70-104
I:70-104
2
FTSZ_2
PS01135
FtsZ protein signature 2.
FTSZ1_METJA
123-144
9
A:123-144
B:123-144
C:123-144
D:123-144
E:123-144
F:123-144
G:123-144
H:123-144
I:123-144
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 18)
Info
All SCOP Domains
1a: SCOP_d1w5ea2 (A:232-354)
1b: SCOP_d1w5eb2 (B:232-354)
1c: SCOP_d1w5ec2 (C:232-354)
1d: SCOP_d1w5ed2 (D:232-354)
1e: SCOP_d1w5ee2 (E:232-354)
1f: SCOP_d1w5ef2 (F:232-354)
1g: SCOP_d1w5eg2 (G:232-354)
1h: SCOP_d1w5eh2 (H:232-354)
1i: SCOP_d1w5ei2 (I:232-354)
2a: SCOP_d1w5ea1 (A:23-231)
2b: SCOP_d1w5eb1 (B:23-231)
2c: SCOP_d1w5ec1 (C:23-231)
2d: SCOP_d1w5ed1 (D:23-231)
2e: SCOP_d1w5ee1 (E:23-231)
2f: SCOP_d1w5ef1 (F:23-231)
2g: SCOP_d1w5eg1 (G:23-231)
2h: SCOP_d1w5eh1 (H:23-231)
2i: SCOP_d1w5ei1 (I:23-231)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Bacillus chorismate mutase-like
(324)
Superfamily
:
Tubulin C-terminal domain-like
(76)
Family
:
Tubulin, C-terminal domain
(69)
Protein domain
:
Cell-division protein FtsZ
(32)
Methanococcus jannaschii [TaxId: 2190]
(7)
1a
d1w5ea2
A:232-354
1b
d1w5eb2
B:232-354
1c
d1w5ec2
C:232-354
1d
d1w5ed2
D:232-354
1e
d1w5ee2
E:232-354
1f
d1w5ef2
F:232-354
1g
d1w5eg2
G:232-354
1h
d1w5eh2
H:232-354
1i
d1w5ei2
I:232-354
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Tubulin nucleotide-binding domain-like
(75)
Superfamily
:
Tubulin nucleotide-binding domain-like
(75)
Family
:
Tubulin, GTPase domain
(69)
Protein domain
:
Cell-division protein FtsZ
(32)
Methanococcus jannaschii [TaxId: 2190]
(7)
2a
d1w5ea1
A:23-231
2b
d1w5eb1
B:23-231
2c
d1w5ec1
C:23-231
2d
d1w5ed1
D:23-231
2e
d1w5ee1
E:23-231
2f
d1w5ef1
F:23-231
2g
d1w5eg1
G:23-231
2h
d1w5eh1
H:23-231
2i
d1w5ei1
I:23-231
[
close SCOP info
]
CATH Domains
(2, 18)
Info
all CATH domains
1a: CATH_1w5eB02 (B:250-355)
1b: CATH_1w5eH02 (H:250-355)
1c: CATH_1w5eA02 (A:250-354)
1d: CATH_1w5eC02 (C:250-354)
1e: CATH_1w5eD02 (D:250-354)
1f: CATH_1w5eF02 (F:250-354)
1g: CATH_1w5eG02 (G:250-354)
1h: CATH_1w5eI02 (I:250-354)
1i: CATH_1w5eE02 (E:250-355)
2a: CATH_1w5eA01 (A:38-249)
2b: CATH_1w5eC01 (C:38-249)
2c: CATH_1w5eD01 (D:38-249)
2d: CATH_1w5eE01 (E:38-249)
2e: CATH_1w5eF01 (F:38-249)
2f: CATH_1w5eG01 (G:38-249)
2g: CATH_1w5eH01 (H:38-249)
2h: CATH_1w5eI01 (I:38-249)
2i: CATH_1w5eB01 (B:38-249)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
60s Ribosomal Protein L30; Chain: A;
(235)
Homologous Superfamily
:
[code=3.30.1330.20, no name defined]
(18)
Methanocaldococcus jannaschii. Organism_taxid: 2190.
(6)
1a
1w5eB02
B:250-355
1b
1w5eH02
H:250-355
1c
1w5eA02
A:250-354
1d
1w5eC02
C:250-354
1e
1w5eD02
D:250-354
1f
1w5eF02
F:250-354
1g
1w5eG02
G:250-354
1h
1w5eI02
I:250-354
1i
1w5eE02
E:250-355
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1440, no name defined]
(23)
Methanocaldococcus jannaschii. Organism_taxid: 2190.
(6)
2a
1w5eA01
A:38-249
2b
1w5eC01
C:38-249
2c
1w5eD01
D:38-249
2d
1w5eE01
E:38-249
2e
1w5eF01
F:38-249
2f
1w5eG01
G:38-249
2g
1w5eH01
H:38-249
2h
1w5eI01
I:38-249
2i
1w5eB01
B:38-249
[
close CATH info
]
Pfam Domains
(2, 18)
Info
all PFAM domains
1a: PFAM_FtsZ_C_1w5eI01 (I:247-341)
1b: PFAM_FtsZ_C_1w5eI02 (I:247-341)
1c: PFAM_FtsZ_C_1w5eI03 (I:247-341)
1d: PFAM_FtsZ_C_1w5eI04 (I:247-341)
1e: PFAM_FtsZ_C_1w5eI05 (I:247-341)
1f: PFAM_FtsZ_C_1w5eI06 (I:247-341)
1g: PFAM_FtsZ_C_1w5eI07 (I:247-341)
1h: PFAM_FtsZ_C_1w5eI08 (I:247-341)
1i: PFAM_FtsZ_C_1w5eI09 (I:247-341)
2a: PFAM_Tubulin_1w5eI10 (I:39-210)
2b: PFAM_Tubulin_1w5eI11 (I:39-210)
2c: PFAM_Tubulin_1w5eI12 (I:39-210)
2d: PFAM_Tubulin_1w5eI13 (I:39-210)
2e: PFAM_Tubulin_1w5eI14 (I:39-210)
2f: PFAM_Tubulin_1w5eI15 (I:39-210)
2g: PFAM_Tubulin_1w5eI16 (I:39-210)
2h: PFAM_Tubulin_1w5eI17 (I:39-210)
2i: PFAM_Tubulin_1w5eI18 (I:39-210)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Tubulin-like
(34)
Family
:
FtsZ_C
(20)
Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Meth
(6)
1a
FtsZ_C-1w5eI01
I:247-341
1b
FtsZ_C-1w5eI02
I:247-341
1c
FtsZ_C-1w5eI03
I:247-341
1d
FtsZ_C-1w5eI04
I:247-341
1e
FtsZ_C-1w5eI05
I:247-341
1f
FtsZ_C-1w5eI06
I:247-341
1g
FtsZ_C-1w5eI07
I:247-341
1h
FtsZ_C-1w5eI08
I:247-341
1i
FtsZ_C-1w5eI09
I:247-341
Family
:
Tubulin
(34)
Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Meth
(6)
2a
Tubulin-1w5eI10
I:39-210
2b
Tubulin-1w5eI11
I:39-210
2c
Tubulin-1w5eI12
I:39-210
2d
Tubulin-1w5eI13
I:39-210
2e
Tubulin-1w5eI14
I:39-210
2f
Tubulin-1w5eI15
I:39-210
2g
Tubulin-1w5eI16
I:39-210
2h
Tubulin-1w5eI17
I:39-210
2i
Tubulin-1w5eI18
I:39-210
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Chain G
Chain H
Chain I
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (478 KB)
Header - Asym.Unit
Biol.Unit 1 (58 KB)
Header - Biol.Unit 1
Biol.Unit 2 (57 KB)
Header - Biol.Unit 2
Biol.Unit 3 (58 KB)
Header - Biol.Unit 3
Biol.Unit 4 (58 KB)
Header - Biol.Unit 4
Biol.Unit 5 (58 KB)
Header - Biol.Unit 5
Biol.Unit 6 (59 KB)
Header - Biol.Unit 6
Biol.Unit 7 (58 KB)
Header - Biol.Unit 7
Biol.Unit 8 (58 KB)
Header - Biol.Unit 8
Biol.Unit 9 (59 KB)
Header - Biol.Unit 9
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1W5E
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help