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1W4A
Biol. Unit 1
Info
Asym.Unit (160 KB)
Biol.Unit 1 (306 KB)
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(1)
Title
:
P4 PROTEIN FROM PHI12 IN COMPLEX WITH AMPCPP AND MN
Authors
:
E. J. Mancini, D. E. Kainov, J. M. Grimes, R. Tuma, D. H. Bamford, D. I. Stuart
Date
:
22 Jul 04 (Deposition) - 29 Oct 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (2x)
Keywords
:
Virus Dsrna, Packaging Atpase, Hexameric Helicase, Molecular Motor, Non-Hydrolysable Atp Analogue, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. J. Mancini, D. E. Kainov, J. M. Grimes, R. Tuma, D. H. Bamford, D. I. Stuart
Atomic Snapshots Of An Rna Packaging Motor Reveal Conformational Changes Linking Atp Hydrolysis To Rna Translocation
Cell(Cambridge, Mass. ) V. 118 743 2004
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Hetero Components
(1, 6)
Info
All Hetero Components
1a: DIPHOSPHOMETHYLPHOSPHONIC ACID ADE... (APCa)
1b: DIPHOSPHOMETHYLPHOSPHONIC ACID ADE... (APCb)
1c: DIPHOSPHOMETHYLPHOSPHONIC ACID ADE... (APCc)
2a: MANGANESE (II) ION (MNa)
2b: MANGANESE (II) ION (MNb)
2c: MANGANESE (II) ION (MNc)
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No.
Name
Count
Type
Full Name
1
APC
6
Ligand/Ion
DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER
2
MN
-1
Ligand/Ion
MANGANESE (II) ION
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR A:137 , APC A:700 , HOH A:2200
BINDING SITE FOR RESIDUE MN A 701
2
AC2
SOFTWARE
THR B:137 , APC B:700
BINDING SITE FOR RESIDUE MN B 701
3
AC3
SOFTWARE
THR C:137 , APC C:700 , HOH C:2202 , HOH C:2203
BINDING SITE FOR RESIDUE MN C 701
4
AC4
SOFTWARE
GLY A:135 , LYS A:136 , THR A:137 , PRO A:138 , LYS A:192 , ASN A:234 , TYR A:288 , SER A:292 , MN A:701 , HOH A:2182 , HOH A:2198 , HOH A:2199 , ARG C:272 , GLY C:276 , GLN C:278 , LYS C:310 , HOH C:2162 , HOH C:2190 , HOH C:2191
BINDING SITE FOR RESIDUE APC A 700
5
AC5
SOFTWARE
ARG A:272 , GLY A:276 , GLN A:278 , LYS A:310 , GLY B:135 , LYS B:136 , THR B:137 , PRO B:138 , LYS B:192 , ASN B:234 , TYR B:288 , SER B:292 , MN B:701 , HOH B:2175 , HOH B:2191 , HOH B:2192 , HOH B:2193
BINDING SITE FOR RESIDUE APC B 700
6
AC6
SOFTWARE
ARG B:272 , GLY B:276 , GLN B:278 , LYS B:310 , HOH B:2187 , HOH B:2188 , GLY C:135 , LYS C:136 , THR C:137 , PRO C:138 , LYS C:192 , ASN C:234 , TYR C:288 , SER C:292 , MN C:701 , HOH C:2195 , HOH C:2196 , HOH C:2197 , HOH C:2198 , HOH C:2199 , HOH C:2200 , HOH C:2201
BINDING SITE FOR RESIDUE APC C 700
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d1w4aa_ (A:)
1b: SCOP_d1w4ab_ (B:)
1c: SCOP_d1w4ac_ (C:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
RecA protein-like (ATPase-domain)
(159)
Protein domain
:
NTPase P4
(10)
Bacteriophage phi-12 [TaxId: 161736]
(10)
1a
d1w4aa_
A:
1b
d1w4ab_
B:
1c
d1w4ac_
C:
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CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_1w4aA01 (A:6-41,A:104-322)
1b: CATH_1w4aB01 (B:6-41,B:104-322)
1c: CATH_1w4aC01 (C:6-41,C:104-322)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Bacteriophage phi12 (Bacteriophage phi-12)
(8)
1a
1w4aA01
A:6-41,A:104-322
1b
1w4aB01
B:6-41,B:104-322
1c
1w4aC01
C:6-41,C:104-322
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Pfam Domains
(0, 0)
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