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1W48
Biol. Unit 1
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Asym.Unit (164 KB)
Biol.Unit 1 (314 KB)
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(1)
Title
:
P4 PROTEIN FROM BACTERIOPHAGE PHI12 IN COMPLEX WITH AMPCPP
Authors
:
E. J. Mancini, D. E. Kainov, J. M. Grimes, R. Tuma, D. H. Bamford, D. I. Stu
Date
:
22 Jul 04 (Deposition) - 29 Oct 04 (Release) - 03 Apr 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (2x)
Keywords
:
Dsrna Virus, Packaging Atpase, Hexameric Helicase, Molecular Motor, Non-Hydrolysable Atp Analogue, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
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Reference
:
E. J. Mancini, D. E. Kainov, J. M. Grimes, R. Tuma, D. H. Bamford, D. I. Stuart
Atomic Snapshots Of An Rna Packaging Motor Reveal Conformational Changes Linking Atp Hydrolysis To Rna Translocation
Cell(Cambridge, Mass. ) V. 118 743 2004
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Hetero Components
(1, 6)
Info
All Hetero Components
1a: DIPHOSPHOMETHYLPHOSPHONIC ACID ADE... (APCa)
1b: DIPHOSPHOMETHYLPHOSPHONIC ACID ADE... (APCb)
1c: DIPHOSPHOMETHYLPHOSPHONIC ACID ADE... (APCc)
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No.
Name
Count
Type
Full Name
1
APC
6
Ligand/Ion
DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:133 , GLY A:135 , LYS A:136 , THR A:137 , GLU A:160 , ASN A:234 , TYR A:288 , SER A:292 , HOH A:2272 , HOH A:2273 , HOH A:2274 , HOH A:2275 , ARG C:251 , SER C:252 , GLY C:276 , GLN C:278 , LYS C:310 , HOH C:2243
BINDING SITE FOR RESIDUE APC A 700
2
AC2
SOFTWARE
SER A:252 , ARG A:272 , GLY A:276 , GLN A:278 , ARG A:279 , LYS A:310 , HOH A:2225 , HOH A:2228 , GLY B:135 , LYS B:136 , THR B:137 , PRO B:138 , GLU B:160 , ASN B:234 , TYR B:288 , SER B:292 , HOH B:2144 , HOH B:2146 , HOH B:2255 , HOH B:2256 , HOH B:2257 , HOH B:2258
BINDING SITE FOR RESIDUE APC B 700
3
AC3
SOFTWARE
GLY B:276 , LEU B:277 , GLN B:278 , LYS B:310 , HOH B:2215 , GLY C:135 , LYS C:136 , THR C:137 , PRO C:138 , ASN C:234 , TYR C:288 , SER C:292 , HOH C:2138 , HOH C:2160 , HOH C:2229 , HOH C:2255 , HOH C:2256
BINDING SITE FOR RESIDUE APC C 700
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d1w48a_ (A:)
1b: SCOP_d1w48b_ (B:)
1c: SCOP_d1w48c_ (C:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
RecA protein-like (ATPase-domain)
(159)
Protein domain
:
NTPase P4
(10)
Bacteriophage phi-12 [TaxId: 161736]
(10)
1a
d1w48a_
A:
1b
d1w48b_
B:
1c
d1w48c_
C:
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CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_1w48A01 (A:6-41,A:104-321)
1b: CATH_1w48B01 (B:6-41,B:104-321)
1c: CATH_1w48C01 (C:6-41,C:104-321)
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(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Bacteriophage phi12 (Bacteriophage phi-12)
(8)
1a
1w48A01
A:6-41,A:104-321
1b
1w48B01
B:6-41,B:104-321
1c
1w48C01
C:6-41,C:104-321
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Pfam Domains
(1, 3)
Info
all PFAM domains
1a: PFAM_NTPase_P4_1w48C01 (C:2-321)
1b: PFAM_NTPase_P4_1w48C02 (C:2-321)
1c: PFAM_NTPase_P4_1w48C03 (C:2-321)
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)
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)
Clan
:
no clan defined [family: NTPase_P4]
(12)
Family
:
NTPase_P4
(12)
Pseudomonas phage phi12
(12)
1a
NTPase_P4-1w48C01
C:2-321
1b
NTPase_P4-1w48C02
C:2-321
1c
NTPase_P4-1w48C03
C:2-321
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