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1W46
Biol. Unit 1
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Asym.Unit (148 KB)
Biol.Unit 1 (281 KB)
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(1)
Title
:
P4 PROTEIN FROM BACTERIOPHAGE PHI12 IN COMPLEX WITH ADP AND MG
Authors
:
E. J. Mancini, D. E. Kainov, J. M. Grimes, R. Tuma, D. H. Bamford, D. I. Stuart
Date
:
22 Jul 04 (Deposition) - 04 Nov 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (2x)
Keywords
:
Dsrna Virus, Packaging Atpase, Hexameric Helicase, Molecular Motor, Non-Hydrolysable Atp Analogue, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
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Reference
:
E. J. Mancini, D. E. Kainov, J. M. Grimes, R. Tuma, D. H. Bamford, D. I. Stuart
Atomic Snapshots Of An Rna Packaging Motor Reveal Conformational Changes Linking Atp Hydrolysis To Rna Translocation
Cell(Cambridge, Mass. ) V. 118 743 2004
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Hetero Components
(1, 6)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
1b: ADENOSINE-5'-DIPHOSPHATE (ADPb)
1c: ADENOSINE-5'-DIPHOSPHATE (ADPc)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
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No.
Name
Count
Type
Full Name
1
ADP
6
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
MG
-1
Ligand/Ion
MAGNESIUM ION
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR A:137 , ASP A:189 , SER A:232 , ADP A:700
BINDING SITE FOR RESIDUE MG A 701
2
AC2
SOFTWARE
THR B:137 , ASP B:189 , SER B:232 , ADP B:700
BINDING SITE FOR RESIDUE MG B 701
3
AC3
SOFTWARE
THR C:137 , ASP C:189 , SER C:232 , ADP C:700
BINDING SITE FOR RESIDUE MG C 701
4
AC4
SOFTWARE
ASN A:133 , SER A:134 , GLY A:135 , LYS A:136 , THR A:137 , ASN A:234 , TYR A:288 , SER A:292 , MG A:701 , HOH A:2103 , HOH A:2111 , GLY C:276 , LEU C:277 , ARG C:279
BINDING SITE FOR RESIDUE ADP A 700
5
AC5
SOFTWARE
GLY A:276 , LEU A:277 , ARG A:279 , ASN B:133 , SER B:134 , GLY B:135 , LYS B:136 , THR B:137 , ASN B:234 , TYR B:288 , SER B:292 , MG B:701
BINDING SITE FOR RESIDUE ADP B 700
6
AC6
SOFTWARE
GLY B:276 , LEU B:277 , ARG B:279 , ASN C:133 , SER C:134 , GLY C:135 , LYS C:136 , THR C:137 , ASN C:234 , TYR C:288 , SER C:292 , MG C:701 , HOH C:2100 , HOH C:2108 , HOH C:2109
BINDING SITE FOR RESIDUE ADP C 700
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d1w46a_ (A:)
1b: SCOP_d1w46b_ (B:)
1c: SCOP_d1w46c_ (C:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
RecA protein-like (ATPase-domain)
(159)
Protein domain
:
NTPase P4
(10)
Bacteriophage phi-12 [TaxId: 161736]
(10)
1a
d1w46a_
A:
1b
d1w46b_
B:
1c
d1w46c_
C:
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CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_1w46A01 (A:1-41,A:104-299)
1b: CATH_1w46B01 (B:1-41,B:104-299)
1c: CATH_1w46C01 (C:1-41,C:104-299)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Bacteriophage phi12 (Bacteriophage phi-12)
(8)
1a
1w46A01
A:1-41,A:104-299
1b
1w46B01
B:1-41,B:104-299
1c
1w46C01
C:1-41,C:104-299
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Pfam Domains
(1, 3)
Info
all PFAM domains
1a: PFAM_NTPase_P4_1w46C01 (C:2-299)
1b: PFAM_NTPase_P4_1w46C02 (C:2-299)
1c: PFAM_NTPase_P4_1w46C03 (C:2-299)
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)
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Clan
:
no clan defined [family: NTPase_P4]
(12)
Family
:
NTPase_P4
(12)
Pseudomonas phage phi12
(12)
1a
NTPase_P4-1w46C01
C:2-299
1b
NTPase_P4-1w46C02
C:2-299
1c
NTPase_P4-1w46C03
C:2-299
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