PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1W3M
Asym. Unit
Info
Asym.Unit (75 KB)
Biol.Unit 1 (61 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF TSUSHIMYCIN
Authors
:
G. Bunkoczi, L. Vertesy, G. M. Sheldrick
Date
:
16 Jul 04 (Deposition) - 27 Jul 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.00
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L (1x)
Keywords
:
Amphomycin, Daptomycin, Lipopetide, Antibiotic, Antibacterial
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Bunkoczi, L. Vertesy, G. M. Sheldrick
Structure Of The Lipopeptide Antibiotic Tsushimycin.
Acta Crystallogr. , Sect. D V. 61 1160 2005
[
close entry info
]
Hetero Components
(8, 112)
Info
All Hetero Components
1a: (2S,3S)-3-METHYL-ASPARTIC ACID (2ASa)
1b: (2S,3S)-3-METHYL-ASPARTIC ACID (2ASb)
1c: (2S,3S)-3-METHYL-ASPARTIC ACID (2ASc)
1d: (2S,3S)-3-METHYL-ASPARTIC ACID (2ASd)
1e: (2S,3S)-3-METHYL-ASPARTIC ACID (2ASe)
1f: (2S,3S)-3-METHYL-ASPARTIC ACID (2ASf)
1g: (2S,3S)-3-METHYL-ASPARTIC ACID (2ASg)
1h: (2S,3S)-3-METHYL-ASPARTIC ACID (2ASh)
1i: (2S,3S)-3-METHYL-ASPARTIC ACID (2ASi)
1j: (2S,3S)-3-METHYL-ASPARTIC ACID (2ASj)
1k: (2S,3S)-3-METHYL-ASPARTIC ACID (2ASk)
1l: (2S,3S)-3-METHYL-ASPARTIC ACID (2ASl)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
2e: CALCIUM ION (CAe)
2f: CALCIUM ION (CAf)
2g: CALCIUM ION (CAg)
2h: CALCIUM ION (CAh)
2i: CALCIUM ION (CAi)
2j: CALCIUM ION (CAj)
2k: CALCIUM ION (CAk)
2l: CALCIUM ION (CAl)
2m: CALCIUM ION (CAm)
2n: CALCIUM ION (CAn)
2o: CALCIUM ION (CAo)
2p: CALCIUM ION (CAp)
2q: CALCIUM ION (CAq)
2r: CALCIUM ION (CAr)
2s: CALCIUM ION (CAs)
2t: CALCIUM ION (CAt)
2u: CALCIUM ION (CAu)
2v: CALCIUM ION (CAv)
2w: CALCIUM ION (CAw)
2x: CALCIUM ION (CAx)
2y: CALCIUM ION (CAy)
3a: CHLORIDE ION (CLa)
3b: CHLORIDE ION (CLb)
3c: CHLORIDE ION (CLc)
3d: CHLORIDE ION (CLd)
3e: CHLORIDE ION (CLe)
3f: CHLORIDE ION (CLf)
3g: CHLORIDE ION (CLg)
3h: CHLORIDE ION (CLh)
3i: CHLORIDE ION (CLi)
3j: CHLORIDE ION (CLj)
4a: 6-CARBOXYPIPERIDINE (CPIa)
4b: 6-CARBOXYPIPERIDINE (CPIb)
4c: 6-CARBOXYPIPERIDINE (CPIc)
4d: 6-CARBOXYPIPERIDINE (CPId)
4e: 6-CARBOXYPIPERIDINE (CPIe)
4f: 6-CARBOXYPIPERIDINE (CPIf)
4g: 6-CARBOXYPIPERIDINE (CPIg)
4h: 6-CARBOXYPIPERIDINE (CPIh)
4i: 6-CARBOXYPIPERIDINE (CPIi)
4j: 6-CARBOXYPIPERIDINE (CPIj)
4k: 6-CARBOXYPIPERIDINE (CPIk)
4l: 6-CARBOXYPIPERIDINE (CPIl)
5a: ETHANOL (EOHa)
5b: ETHANOL (EOHb)
5c: ETHANOL (EOHc)
5d: ETHANOL (EOHd)
5e: ETHANOL (EOHe)
5f: ETHANOL (EOHf)
5g: ETHANOL (EOHg)
5h: ETHANOL (EOHh)
5i: ETHANOL (EOHi)
5j: ETHANOL (EOHj)
5k: ETHANOL (EOHk)
5l: ETHANOL (EOHl)
5m: ETHANOL (EOHm)
5n: ETHANOL (EOHn)
5o: ETHANOL (EOHo)
5p: ETHANOL (EOHp)
5q: ETHANOL (EOHq)
6a: DELTA-3ISOTETRADECENOIC ACID (LNGa)
6b: DELTA-3ISOTETRADECENOIC ACID (LNGb)
6c: DELTA-3ISOTETRADECENOIC ACID (LNGc)
6d: DELTA-3ISOTETRADECENOIC ACID (LNGd)
6e: DELTA-3ISOTETRADECENOIC ACID (LNGe)
6f: DELTA-3ISOTETRADECENOIC ACID (LNGf)
6g: DELTA-3ISOTETRADECENOIC ACID (LNGg)
6h: DELTA-3ISOTETRADECENOIC ACID (LNGh)
6i: DELTA-3ISOTETRADECENOIC ACID (LNGi)
6j: DELTA-3ISOTETRADECENOIC ACID (LNGj)
6k: DELTA-3ISOTETRADECENOIC ACID (LNGk)
6l: DELTA-3ISOTETRADECENOIC ACID (LNGl)
7a: (2R,3R)-2,3-DIAMINOBUTANOIC ACID (VDLa)
7b: (2R,3R)-2,3-DIAMINOBUTANOIC ACID (VDLb)
7c: (2R,3R)-2,3-DIAMINOBUTANOIC ACID (VDLc)
7d: (2R,3R)-2,3-DIAMINOBUTANOIC ACID (VDLd)
7e: (2R,3R)-2,3-DIAMINOBUTANOIC ACID (VDLe)
7f: (2R,3R)-2,3-DIAMINOBUTANOIC ACID (VDLf)
7g: (2R,3R)-2,3-DIAMINOBUTANOIC ACID (VDLg)
7h: (2R,3R)-2,3-DIAMINOBUTANOIC ACID (VDLh)
7i: (2R,3R)-2,3-DIAMINOBUTANOIC ACID (VDLi)
7j: (2R,3R)-2,3-DIAMINOBUTANOIC ACID (VDLj)
7k: (2R,3R)-2,3-DIAMINOBUTANOIC ACID (VDLk)
7l: (2R,3R)-2,3-DIAMINOBUTANOIC ACID (VDLl)
8a: (2S)-2,3-DIAMINOBUTANOIC ACID (VLLa)
8b: (2S)-2,3-DIAMINOBUTANOIC ACID (VLLb)
8c: (2S)-2,3-DIAMINOBUTANOIC ACID (VLLc)
8d: (2S)-2,3-DIAMINOBUTANOIC ACID (VLLd)
8e: (2S)-2,3-DIAMINOBUTANOIC ACID (VLLe)
8f: (2S)-2,3-DIAMINOBUTANOIC ACID (VLLf)
8g: (2S)-2,3-DIAMINOBUTANOIC ACID (VLLg)
8h: (2S)-2,3-DIAMINOBUTANOIC ACID (VLLh)
8i: (2S)-2,3-DIAMINOBUTANOIC ACID (VLLi)
8j: (2S)-2,3-DIAMINOBUTANOIC ACID (VLLj)
8k: (2S)-2,3-DIAMINOBUTANOIC ACID (VLLk)
8l: (2S)-2,3-DIAMINOBUTANOIC ACID (VLLl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
2AS
12
Mod. Amino Acid
(2S,3S)-3-METHYL-ASPARTIC ACID
2
CA
25
Ligand/Ion
CALCIUM ION
3
CL
10
Ligand/Ion
CHLORIDE ION
4
CPI
12
Mod. Amino Acid
6-CARBOXYPIPERIDINE
5
EOH
17
Ligand/Ion
ETHANOL
6
LNG
12
Ligand/Ion
DELTA-3ISOTETRADECENOIC ACID
7
VDL
12
Mod. Amino Acid
(2R,3R)-2,3-DIAMINOBUTANOIC ACID
8
VLL
12
Mod. Amino Acid
(2S)-2,3-DIAMINOBUTANOIC ACID
[
close Hetero Component info
]
Sites
(76, 76)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
51: FC6 (SOFTWARE)
52: FC7 (SOFTWARE)
53: FC8 (SOFTWARE)
54: FC9 (SOFTWARE)
55: GC1 (SOFTWARE)
56: GC2 (SOFTWARE)
57: GC3 (SOFTWARE)
58: GC4 (SOFTWARE)
59: GC5 (SOFTWARE)
60: GC6 (SOFTWARE)
61: GC7 (SOFTWARE)
62: GC8 (SOFTWARE)
63: GC9 (SOFTWARE)
64: HC1 (SOFTWARE)
65: HC2 (SOFTWARE)
66: HC3 (SOFTWARE)
67: HC4 (SOFTWARE)
68: HC5 (SOFTWARE)
69: HC6 (SOFTWARE)
70: HC7 (SOFTWARE)
71: HC8 (SOFTWARE)
72: HC9 (SOFTWARE)
73: IC1 (SOFTWARE)
74: IC2 (SOFTWARE)
75: IC3 (SOFTWARE)
76: IC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:1 , VLL A:2 , HOH A:2001 , EOH B:3021 , 2AS F:4
BINDING SITE FOR RESIDUE LNG A 0
02
AC2
SOFTWARE
VLL A:2 , ASP A:5 , GLY A:6 , GLY A:8 , VAL A:10 , CL A:3014
BINDING SITE FOR RESIDUE CA A3013
03
AC3
SOFTWARE
VLL A:2 , GLY A:6 , GLY A:8 , VAL A:10 , HOH A:2003 , CA A:3013 , CL A:3015
BINDING SITE FOR RESIDUE CL A3014
04
AC4
SOFTWARE
GLY A:8 , HOH A:2013 , CL A:3014 , HOH K:2003
BINDING SITE FOR RESIDUE CL A3015
05
AC5
SOFTWARE
ASP B:1 , CA B:3016 , 2AS E:4 , ASP K:1
BINDING SITE FOR RESIDUE LNG B 0
06
AC6
SOFTWARE
2AS B:4 , ASP B:5 , GLY B:6 , VDL D:9 , HOH I:2014
BINDING SITE FOR RESIDUE EOH B3013
07
AC7
SOFTWARE
ASP B:5 , ASP B:7 , CA B:3017 , HOH G:2013 , ASP I:5 , HOH I:2007 , HOH I:2008 , HOH I:2010
BINDING SITE FOR RESIDUE EOH B3014
08
AC8
SOFTWARE
ASP B:1 , VLL B:2 , ASP B:5 , GLY B:6 , GLY B:8 , VAL B:10 , HOH B:2005
BINDING SITE FOR RESIDUE CA B3015
09
AC9
SOFTWARE
LNG B:0 , ASP B:1 , ASP B:7 , HOH B:2009 , 2AS E:4 , HOH G:2016
BINDING SITE FOR RESIDUE CA B3016
10
BC1
SOFTWARE
ASP B:5 , HOH B:2006 , HOH B:2007 , EOH B:3014 , HOH I:2007 , HOH I:2008 , HOH I:2014
BINDING SITE FOR RESIDUE CA B3017
11
BC2
SOFTWARE
VLL B:2 , CPI B:3 , 2AS B:4 , HOH B:2001
BINDING SITE FOR RESIDUE CL B3018
12
BC3
SOFTWARE
2AS B:4 , HOH B:2015 , LNG L:0 , ASP L:1 , ASP L:7 , GLY L:8 , CL L:3014
BINDING SITE FOR RESIDUE EOH B3019
13
BC4
SOFTWARE
VLL G:2 , ASP K:1 , CL K:3017
BINDING SITE FOR RESIDUE EOH B3020
14
BC5
SOFTWARE
LNG A:0
BINDING SITE FOR RESIDUE EOH B3021
15
BC6
SOFTWARE
ASP C:1 , HOH C:2001 , CA C:3016 , 2AS L:4
BINDING SITE FOR RESIDUE LNG C 0
16
BC7
SOFTWARE
ASP A:5 , ASP C:5 , HOH C:2007 , HOH C:2013 , HOH C:2014 , HOH C:2015 , HOH C:2026 , CA C:3015
BINDING SITE FOR RESIDUE EOH C3013
17
BC8
SOFTWARE
VLL C:2 , ASP C:5 , GLY C:6 , GLY C:8 , VAL C:10 , CL C:3017
BINDING SITE FOR RESIDUE CA C3014
18
BC9
SOFTWARE
ASP A:5 , HOH A:2008 , HOH A:2011 , ASP C:5 , HOH C:2013 , HOH C:2015 , EOH C:3013
BINDING SITE FOR RESIDUE CA C3015
19
CC1
SOFTWARE
LNG C:0 , ASP C:1 , ASP C:7 , HOH C:2022 , CL C:3017 , HOH E:2015 , 2AS L:4
BINDING SITE FOR RESIDUE CA C3016
20
CC2
SOFTWARE
ASP C:1 , VLL C:2 , GLY C:6 , GLY C:8 , VAL C:10 , HOH C:2006 , HOH C:2022 , CA C:3014 , CA C:3016 , CL C:3018
BINDING SITE FOR RESIDUE CL C3017
21
CC3
SOFTWARE
GLY C:8 , HOH C:2006 , HOH C:2023 , CL C:3017 , HOH E:2001
BINDING SITE FOR RESIDUE CL C3018
22
CC4
SOFTWARE
ASP D:1 , CA D:3014 , 2AS G:4
BINDING SITE FOR RESIDUE LNG D 0
23
CC5
SOFTWARE
ASP D:1 , VLL D:2 , ASP D:5 , GLY D:6 , GLY D:8 , VAL D:10 , HOH D:2007
BINDING SITE FOR RESIDUE CA D3013
24
CC6
SOFTWARE
LNG D:0 , ASP D:1 , ASP D:7 , HOH D:2001 , 2AS G:4 , HOH L:2010
BINDING SITE FOR RESIDUE CA D3014
25
CC7
SOFTWARE
ASP D:1 , VLL D:2 , CPI D:3 , 2AS D:4
BINDING SITE FOR RESIDUE CL D3015
26
CC8
SOFTWARE
2AS D:4 , ASP E:1 , CA E:3014 , EOH J:3013
BINDING SITE FOR RESIDUE LNG E 0
27
CC9
SOFTWARE
ASP E:1 , VLL E:2 , ASP E:5 , GLY E:6 , GLY E:8 , VAL E:10 , HOH E:2004
BINDING SITE FOR RESIDUE CA E3013
28
DC1
SOFTWARE
HOH C:2023 , 2AS D:4 , LNG E:0 , ASP E:1 , ASP E:7 , HOH E:2010
BINDING SITE FOR RESIDUE CA E3014
29
DC2
SOFTWARE
2AS D:4 , HOH E:2010 , EOH L:3015
BINDING SITE FOR RESIDUE EOH E3015
30
DC3
SOFTWARE
ASP F:1 , HOH F:2001 , CA F:3014 , 2AS I:4
BINDING SITE FOR RESIDUE LNG F 0
31
DC4
SOFTWARE
ASP F:1 , VLL F:2 , ASP F:5 , GLY F:6 , GLY F:8 , VAL F:10 , HOH F:2006
BINDING SITE FOR RESIDUE CA F3013
32
DC5
SOFTWARE
LNG F:0 , ASP F:1 , ASP F:7 , HOH F:2001 , 2AS I:4 , HOH J:2013
BINDING SITE FOR RESIDUE CA F3014
33
DC6
SOFTWARE
VLL F:2 , CPI F:3 , 2AS F:4
BINDING SITE FOR RESIDUE CL F3015
34
DC7
SOFTWARE
PRO B:11 , 2AS C:4 , CPI F:3 , ASP G:1 , CA G:3016 , PRO H:11
BINDING SITE FOR RESIDUE LNG G 0
35
DC8
SOFTWARE
PRO H:11
BINDING SITE FOR RESIDUE EOH G3013
36
DC9
SOFTWARE
ASP F:7 , HOH F:2009 , HOH F:2017 , ASP G:5 , HOH G:2006 , HOH G:2017 , ASP J:7 , HOH J:2010
BINDING SITE FOR RESIDUE EOH G3014
37
EC1
SOFTWARE
ASP G:1 , VLL G:2 , ASP G:5 , GLY G:6 , GLY G:8 , VAL G:10 , HOH G:2002
BINDING SITE FOR RESIDUE CA G3015
38
EC2
SOFTWARE
HOH B:2014 , 2AS C:4 , LNG G:0 , ASP G:1 , ASP G:7 , HOH G:2012
BINDING SITE FOR RESIDUE CA G3016
39
EC3
SOFTWARE
ASP G:7 , HOH G:2004 , HOH G:2013 , HOH G:2014 , HOH G:2015 , HOH J:2005 , HOH J:2006
BINDING SITE FOR RESIDUE CA G3017
40
EC4
SOFTWARE
2AS A:4 , ASP H:1 , CA H:3017
BINDING SITE FOR RESIDUE LNG H 0
41
EC5
SOFTWARE
ASP H:1 , ASP H:5 , GLY H:6 , ASP H:7 , HOH H:2006
BINDING SITE FOR RESIDUE EOH H3013
42
EC6
SOFTWARE
ASP H:5 , GLY H:6 , HOH H:2016 , HOH H:2017 , ASP L:7
BINDING SITE FOR RESIDUE EOH H3014
43
EC7
SOFTWARE
ASP D:7 , VDL F:9 , 2AS H:4 , ASP H:5 , GLY H:6 , HOH H:2016
BINDING SITE FOR RESIDUE EOH H3015
44
EC8
SOFTWARE
ASP H:1 , VLL H:2 , ASP H:5 , GLY H:6 , GLY H:8 , VAL H:10 , HOH H:2006
BINDING SITE FOR RESIDUE CA H3016
45
EC9
SOFTWARE
2AS A:4 , LNG H:0 , ASP H:1 , ASP H:7 , HOH H:2003 , HOH I:2015
BINDING SITE FOR RESIDUE CA H3017
46
FC1
SOFTWARE
VLL G:2 , ASP I:1 , CA I:3014 , 2AS K:4
BINDING SITE FOR RESIDUE LNG I 0
47
FC2
SOFTWARE
ASP I:1 , VLL I:2 , ASP I:5 , GLY I:6 , GLY I:8 , VAL I:10 , HOH I:2005
BINDING SITE FOR RESIDUE CA I3013
48
FC3
SOFTWARE
HOH H:2015 , LNG I:0 , ASP I:1 , ASP I:7 , HOH I:2001 , 2AS K:4
BINDING SITE FOR RESIDUE CA I3014
49
FC4
SOFTWARE
CPI B:3 , PRO C:11 , PRO F:11 , 2AS H:4 , ASP J:1 , CA J:3015 , EOH J:3017
BINDING SITE FOR RESIDUE LNG J 0
50
FC5
SOFTWARE
LNG E:0 , PRO J:11
BINDING SITE FOR RESIDUE EOH J3013
51
FC6
SOFTWARE
ASP J:1 , VLL J:2 , ASP J:5 , GLY J:6 , GLY J:8 , VAL J:10 , HOH J:2003
BINDING SITE FOR RESIDUE CA J3014
52
FC7
SOFTWARE
HOH F:2020 , 2AS H:4 , LNG J:0 , ASP J:1 , ASP J:7 , HOH J:2011
BINDING SITE FOR RESIDUE CA J3015
53
FC8
SOFTWARE
VLL J:2 , CPI J:3 , 2AS J:4
BINDING SITE FOR RESIDUE CL J3016
54
FC9
SOFTWARE
HOH E:2003 , LNG J:0
BINDING SITE FOR RESIDUE EOH J3017
55
GC1
SOFTWARE
2AS J:4 , ASP K:1 , HOH K:2001 , CA K:3016
BINDING SITE FOR RESIDUE LNG K 0
56
GC2
SOFTWARE
GLY K:6 , HOH K:2002 , HOH K:2018
BINDING SITE FOR RESIDUE EOH K3013
57
GC3
SOFTWARE
GLY K:6 , ASP K:7 , HOH K:2018
BINDING SITE FOR RESIDUE EOH K3014
58
GC4
SOFTWARE
ASP K:1 , VLL K:2 , ASP K:5 , GLY K:6 , GLY K:8 , VAL K:10 , HOH K:2006
BINDING SITE FOR RESIDUE CA K3015
59
GC5
SOFTWARE
HOH A:2013 , 2AS J:4 , LNG K:0 , ASP K:1 , ASP K:7 , HOH K:2001
BINDING SITE FOR RESIDUE CA K3016
60
GC6
SOFTWARE
EOH B:3020 , VLL K:2 , CPI K:3 , 2AS K:4
BINDING SITE FOR RESIDUE CL K3017
61
GC7
SOFTWARE
2AS B:4 , EOH B:3019 , ASP L:1
BINDING SITE FOR RESIDUE LNG L 0
62
GC8
SOFTWARE
VLL L:2 , ASP L:5 , GLY L:6 , GLY L:8 , VAL L:10 , CL L:3014
BINDING SITE FOR RESIDUE CA L3013
63
GC9
SOFTWARE
EOH B:3019 , VLL L:2 , GLY L:6 , GLY L:8 , VAL L:10 , CA L:3013
BINDING SITE FOR RESIDUE CL L3014
64
HC1
SOFTWARE
VDL C:9 , ASP E:7 , EOH E:3015
BINDING SITE FOR RESIDUE EOH L3015
65
HC2
SOFTWARE
VDL A:9 , VAL A:10 , PRO A:11 , ASP J:1 , ASP J:5 , VAL J:10 , PRO J:11 , HOH J:2002 , HOH J:2003 , HOH J:2004 , CA J:3014 , CL J:3016 , LNG K:0 , ASP K:7 , CA K:3016
BINDING SITE FOR CHAIN J OF RESIDUES 2 TO 4
66
HC3
SOFTWARE
LNG A:0 , HOH A:2002 , HOH A:2003 , HOH A:2005 , HOH A:2007 , HOH A:2008 , HOH A:2009 , HOH A:2010 , HOH A:2011 , HOH A:2012 , HOH A:2013 , CA A:3013 , CL A:3014 , CL A:3015 , HOH C:2019 , HOH C:2021 , EOH C:3013 , CA C:3015 , 2AS F:4 , HOH F:2010 , LNG H:0 , ASP H:1 , ASP H:7 , CA H:3017 , VDL I:9 , VAL I:10 , PRO I:11 , CPI J:3 , 2AS J:4 , ASP K:7 , GLY K:8 , VDL K:9
BINDING SITE FOR CHAIN A OF TSUSHIMYCIN
67
HC4
SOFTWARE
LNG B:0 , HOH B:2002 , HOH B:2005 , HOH B:2006 , HOH B:2008 , HOH B:2011 , HOH B:2012 , HOH B:2014 , EOH B:3013 , EOH B:3014 , CA B:3015 , CA B:3016 , CA B:3017 , CL B:3018 , EOH B:3019 , CPI C:3 , 2AS C:4 , ASP C:5 , VDL D:9 , VAL D:10 , PRO D:11 , 2AS E:4 , LNG G:0 , ASP G:7 , GLY G:8 , VDL G:9 , HOH G:2014 , HOH I:2014 , LNG J:0 , VLL K:2 , PRO K:11 , LNG L:0 , ASP L:7
BINDING SITE FOR CHAIN B OF TSUSHIMYCIN
68
HC5
SOFTWARE
HOH A:2011 , VDL B:9 , VAL B:10 , PRO B:11 , LNG C:0 , HOH C:2002 , HOH C:2003 , HOH C:2006 , HOH C:2012 , HOH C:2013 , HOH C:2014 , HOH C:2015 , HOH C:2016 , HOH C:2018 , HOH C:2019 , HOH C:2020 , HOH C:2021 , HOH C:2022 , HOH C:2023 , EOH C:3013 , CA C:3014 , CA C:3015 , CA C:3016 , CL C:3017 , CL C:3018 , CPI D:3 , 2AS D:4 , ASP E:7 , GLY E:8 , VDL E:9 , LNG G:0 , ASP G:7 , CA G:3016 , LNG J:0 , 2AS L:4 , HOH L:2004 , EOH L:3015
BINDING SITE FOR CHAIN C OF TSUSHIMYCIN
69
HC6
SOFTWARE
CPI B:3 , 2AS B:4 , ASP B:5 , HOH B:2015 , EOH B:3013 , VDL C:9 , VAL C:10 , PRO C:11 , LNG D:0 , HOH D:2003 , HOH D:2006 , HOH D:2007 , HOH D:2008 , HOH D:2009 , HOH D:2010 , CA D:3013 , CA D:3014 , CL D:3015 , LNG E:0 , ASP E:7 , CA E:3014 , EOH E:3015 , ASP F:1 , VLL F:2 , 2AS G:4 , HOH H:2016 , EOH H:3015 , ASP L:7 , GLY L:8 , VDL L:9
BINDING SITE FOR CHAIN D OF TSUSHIMYCIN
70
HC7
SOFTWARE
LNG B:0 , ASP B:7 , CA B:3016 , ASP C:7 , GLY C:8 , VDL C:9 , HOH C:2018 , 2AS D:4 , LNG E:0 , HOH E:2001 , HOH E:2004 , HOH E:2005 , HOH E:2008 , HOH E:2009 , HOH E:2011 , HOH E:2012 , HOH E:2013 , HOH E:2014 , HOH E:2015 , CA E:3013 , CA E:3014 , VDL G:9 , VAL G:10 , PRO G:11 , CPI L:3 , 2AS L:4 , EOH L:3015
BINDING SITE FOR CHAIN E OF TSUSHIMYCIN
71
HC8
SOFTWARE
LNG A:0 , ASP A:1 , ASP A:7 , HOH A:2002 , VLL D:2 , PRO D:11 , LNG F:0 , HOH F:2001 , HOH F:2006 , HOH F:2007 , HOH F:2010 , HOH F:2011 , HOH F:2013 , HOH F:2014 , HOH F:2016 , HOH F:2017 , HOH F:2018 , HOH F:2020 , CA F:3013 , CA F:3014 , CL F:3015 , LNG G:0 , EOH G:3014 , CPI H:3 , 2AS H:4 , EOH H:3015 , 2AS I:4 , LNG J:0 , ASP J:7 , GLY J:8 , VDL J:9 , VDL K:9 , VAL K:10 , PRO K:11
BINDING SITE FOR CHAIN F OF TSUSHIMYCIN
72
HC9
SOFTWARE
ASP B:7 , GLY B:8 , VDL B:9 , EOH B:3020 , 2AS C:4 , LNG D:0 , ASP D:7 , CA D:3014 , CPI E:3 , 2AS E:4 , LNG G:0 , HOH G:2001 , HOH G:2002 , HOH G:2003 , HOH G:2006 , HOH G:2010 , HOH G:2011 , HOH G:2014 , HOH G:2016 , HOH G:2017 , EOH G:3014 , CA G:3015 , CA G:3016 , CA G:3017 , LNG I:0 , HOH J:2010 , VDL L:9 , VAL L:10 , HOH L:2010
BINDING SITE FOR CHAIN G OF TSUSHIMYCIN
73
IC1
SOFTWARE
2AS A:4 , VDL F:9 , VAL F:10 , LNG G:0 , EOH G:3013 , LNG H:0 , HOH H:2001 , HOH H:2002 , HOH H:2003 , HOH H:2004 , HOH H:2006 , HOH H:2007 , HOH H:2009 , HOH H:2010 , HOH H:2011 , HOH H:2013 , HOH H:2014 , HOH H:2015 , HOH H:2016 , HOH H:2017 , EOH H:3013 , EOH H:3014 , EOH H:3015 , CA H:3016 , CA H:3017 , ASP I:7 , GLY I:8 , VDL I:9 , LNG J:0 , ASP J:7 , CA J:3015 , CPI K:3 , 2AS K:4
BINDING SITE FOR CHAIN H OF TSUSHIMYCIN
74
IC2
SOFTWARE
CPI A:3 , 2AS A:4 , ASP A:5 , EOH B:3014 , LNG F:0 , ASP F:7 , HOH F:2001 , CA F:3014 , ASP H:7 , GLY H:8 , VDL H:9 , LNG I:0 , HOH I:2002 , HOH I:2003 , HOH I:2004 , HOH I:2005 , HOH I:2007 , HOH I:2008 , HOH I:2009 , HOH I:2011 , HOH I:2014 , HOH I:2015 , HOH I:2016 , CA I:3013 , CA I:3014 , VDL J:9 , VAL J:10 , PRO J:11 , 2AS K:4
BINDING SITE FOR CHAIN I OF TSUSHIMYCIN
75
IC3
SOFTWARE
ASP A:7 , GLY A:8 , VDL A:9 , HOH A:2012 , LNG B:0 , VLL B:2 , EOH B:3020 , CPI F:3 , 2AS F:4 , ASP F:5 , VDL H:9 , VAL H:10 , PRO H:11 , LNG I:0 , ASP I:7 , CA I:3014 , 2AS J:4 , LNG K:0 , HOH K:2003 , HOH K:2005 , HOH K:2006 , HOH K:2007 , HOH K:2008 , HOH K:2010 , HOH K:2011 , HOH K:2012 , HOH K:2013 , HOH K:2014 , EOH K:3013 , EOH K:3014 , CA K:3015 , CA K:3016 , CL K:3017
BINDING SITE FOR CHAIN K OF TSUSHIMYCIN
76
IC4
SOFTWARE
2AS B:4 , EOH B:3019 , LNG C:0 , ASP C:1 , ASP C:7 , CA C:3016 , ASP D:7 , GLY D:8 , VDL D:9 , VDL E:9 , VAL E:10 , PRO E:11 , CPI G:3 , 2AS G:4 , ASP G:5 , HOH H:2013 , EOH H:3014 , LNG L:0 , HOH L:2003 , HOH L:2004 , HOH L:2006 , HOH L:2009 , HOH L:2010 , CA L:3013 , CL L:3014
BINDING SITE FOR CHAIN L OF TSUSHIMYCIN
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Chain G
Chain H
Chain I
Chain J
Chain K
Chain L
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (75 KB)
Header - Asym.Unit
Biol.Unit 1 (61 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1W3M
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
