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1W3C
Asym. Unit
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Asym.Unit (68 KB)
Biol.Unit 1 (33 KB)
Biol.Unit 2 (33 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE HEPATITIS C VIRUS NS3 PROTEASE IN COMPLEX WITH A PEPTIDOMIMETIC INHIBITOR
Authors
:
S. Di Marco, C. Volpari
Date
:
14 Jul 04 (Deposition) - 09 Dec 04 (Release) - 23 Sep 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Hydrolase, Serine Protease, Hcv, Indoline-Based Peptidomimetic Inhibitor
(Keyword Search:
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]
)
Reference
:
J. M. Ontoria, S. Di Marco, I. Conte, M. E. Di Francesco, C. Gardelli, U. Koch, V. G. Matassa, M. Poma, C. Steinkuhler, C. Volpari, S. Harper
The Design And Enzyme-Bound Crystal Structure Of Indoline Based Peptidomimetic Inhibitors Of Hepatitis C Virus Ns3 Protease
J. Med. Chem. V. 47 6443 2004
(for further references see the
PDB file header
)
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: 3-({(2S)-2-[({(1R)-1-[({(1R)-1-[(R... (DN1a)
2a: 3-({(2S)-2-[({(1S)-1-[({(1S)-1-[(R... (DN2a)
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No.
Name
Count
Type
Full Name
1
DN1
1
Ligand/Ion
3-({(2S)-2-[({(1R)-1-[({(1R)-1-[(R)-CARBOXY(HYDROXY)METHYL]-3,3-DIFLUOROPROPYL}AMINO)CARBONYL]-3-METHYLBUTYL}AMINO)CARBONYL]-2,3-DIHYDRO-1H-INDOL-2-YL}METHYL)THIOPHENE-2-CARBOXYLIC ACID
2
DN2
1
Ligand/Ion
3-({(2S)-2-[({(1S)-1-[({(1S)-1-[(R)-CARBOXY(HYDROXY)METHYL]-3,3-DIFLUOROPROPYL}AMINO)CARBONYL]-3-METHYLBUTYL}AMINO)CARBONYL]-2,3-DIHYDRO-1H-INDOL-2-YL}METHYL)THIOPHENE-2-CARBOXYLIC ACID
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:57 , LYS A:136 , GLY A:137 , SER A:138 , SER A:139 , PHE A:154 , ARG A:155 , ALA A:156 , ALA A:157 , CYS A:159
BINDING SITE FOR LIGAND DN1 A1176 BOUND TO SER A 139
2
AC2
SOFTWARE
HIS B:57 , LEU B:135 , LYS B:136 , GLY B:137 , SER B:138 , SER B:139 , ARG B:155 , ALA B:156 , ALA B:157 , HOH B:2087
BINDING SITE FOR LIGAND DN2 B1176 BOUND TO SER B 139
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SAPs(SNPs)/Variants
(2, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_POLG_HCVJA_014 (I114I, chain A/B, )
2: VAR_POLG_HCVJA_015 (V132V, chain A/B, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_POLG_HCVJA_014
*
V
1140
I
POLG_HCVJA
---
---
A/B
I
114
I
2
UniProt
VAR_POLG_HCVJA_015
*
I
1158
V
POLG_HCVJA
---
---
A/B
V
132
V
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1w3c_1 (A:,C:)
1b: SCOP_d1w3c_2 (B:,D:)
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Protein Domains
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(
)
Class
:
All beta proteins
(24004)
Fold
:
Trypsin-like serine proteases
(1752)
Superfamily
:
Trypsin-like serine proteases
(1752)
Family
:
Viral proteases
(62)
Protein domain
:
NS3 protease
(20)
Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
(14)
1a
d1w3c.1
A:,C:
1b
d1w3c.2
B:,D:
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1w3cA01 (A:7-94)
1b: CATH_1w3cB01 (B:7-94)
2a: CATH_1w3cA02 (A:95-176)
2b: CATH_1w3cB02 (B:95-176)
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Organisms
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(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Thrombin, subunit H
(1535)
Homologous Superfamily
:
[code=2.40.10.120, no name defined]
(40)
Hepatitis c virus (isolate 1).
(1)
1a
1w3cA01
A:7-94
1b
1w3cB01
B:7-94
Homologous Superfamily
:
Trypsin-like serine proteases
(1488)
Hepatitis c virus (isolate 1).
(1)
2a
1w3cA02
A:95-176
2b
1w3cB02
B:95-176
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Peptidase_S29_1w3cB01 (B:30-176)
1b: PFAM_Peptidase_S29_1w3cB02 (B:30-176)
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Clan
:
Peptidase_PA
(797)
Family
:
Peptidase_S29
(32)
Hepatitis C virus genotype 1b (isolate Japanese) (HCV)
(4)
1a
Peptidase_S29-1w3cB01
B:30-176
1b
Peptidase_S29-1w3cB02
B:30-176
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Asym.Unit (68 KB)
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