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1W3B
Asym. Unit
Info
Asym.Unit (119 KB)
Biol.Unit 1 (113 KB)
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(1)
Title
:
THE SUPERHELICAL TPR DOMAIN OF O-LINKED GLCNAC TRANSFERASE REVEALS STRUCTURAL SIMILARITIES TO IMPORTIN ALPHA.
Authors
:
M. Jinek, J. Rehwinkel, B. D. Lazarus, E. Izaurralde, J. A. Hanover, E. Conti
Date
:
14 Jul 04 (Deposition) - 09 Sep 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.85
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Ogt, Glcnac, Nucleoporin, O-Linked Glycosylation, Tpr Repeat, Protein Binding, Signal Transduction, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Jinek, J. Rehwinkel, B. D. Lazarus, E. Izaurralde, J. A. Hanover, E. Conti
The Superhelical Tpr-Repeat Domain Of O-Linked Glcnac Transferase Exhibits Structural Similarities To Importin Alpha
Nat. Struct. Mol. Biol. V. 11 1001 2004
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
1
Ligand/Ion
CALCIUM ION
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU A:397 , ASP A:400 , GLU B:97 , GLU B:100
BINDING SITE FOR RESIDUE CA A1001
[
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SAPs(SNPs)/Variants
(3, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_079254 (L244F, chain A/B, )
2: VAR_079183 (R274P, chain A/B, )
3: VAR_074019 (A309T, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_079254
L
254
F
OGT1_HUMAN
---
---
A/B
L
244
F
2
UniProt
VAR_079183
R
284
P
OGT1_HUMAN
---
---
A/B
R
274
P
3
UniProt
VAR_074019
A
319
T
OGT1_HUMAN
Disease
---
A/B
A
309
T
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 20)
Info
All PROSITE Patterns/Profiles
1: TPR (-|A:79-112,B:79-112|A:113-146,B:11...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TPR
PS50005
TPR repeat profile.
OGT1_HUMAN
21-54
89-122
123-156
157-190
191-224
225-258
259-292
293-326
327-360
361-394
395-428
429-462
20
-
A:79-112
B:79-112
A:113-146
B:113-146
A:147-180
B:147-180
A:181-214
B:181-214
A:215-248
B:215-248
A:249-282
B:249-282
A:283-316
B:283-316
A:317-350
B:317-350
A:351-384
B:351-384
A:385-400
B:385-400
-
[
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Exons
(9, 18)
Info
All Exons
Exon 1.3a (A:13-63 | B:13-63)
Exon 1.5 (A:63-144 | B:63-144)
Exon 1.6b (A:145-167 | B:145-167)
Exon 1.6f (A:168-206 | B:168-206)
Exon 1.8 (A:207-233 | B:207-233)
Exon 1.9b (A:233-298 | B:233-298)
Exon 1.10b (A:299-345 | B:299-345 (gaps))
Exon 1.11c (A:346-379 | B:346-379)
Exon 1.12c (A:379-400 | B:379-400)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.1a/1.3a
02: Boundary 1.3a/1.5
03: Boundary 1.5/1.6b
04: Boundary 1.6b/1.6f
05: Boundary 1.6f/1.8
06: Boundary 1.8/1.9b
07: Boundary 1.9b/1.10b
08: Boundary 1.10b/1.11c
09: Boundary 1.11c/1.12c
10: Boundary 1.12c/1.13
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000373719
1a
ENSE00001225746
X:70752933-70753186
254
OGT1_HUMAN
1-13
13
0
-
-
1.3a
ENST00000373719
3a
ENSE00001632316
X:70756028-70756208
181
OGT1_HUMAN
13-73
61
2
A:13-63
B:13-63
51
51
1.5
ENST00000373719
5
ENSE00000978988
X:70757679-70757922
244
OGT1_HUMAN
73-154
82
2
A:63-144
B:63-144
82
82
1.6b
ENST00000373719
6b
ENSE00000978989
X:70764417-70764485
69
OGT1_HUMAN
155-177
23
2
A:145-167
B:145-167
23
23
1.6f
ENST00000373719
6f
ENSE00001154534
X:70767757-70767873
117
OGT1_HUMAN
178-216
39
2
A:168-206
B:168-206
39
39
1.8
ENST00000373719
8
ENSE00001387445
X:70774363-70774442
80
OGT1_HUMAN
217-243
27
2
A:207-233
B:207-233
27
27
1.9b
ENST00000373719
9b
ENSE00001160307
X:70775040-70775235
196
OGT1_HUMAN
243-308
66
2
A:233-298
B:233-298
66
66
1.10b
ENST00000373719
10b
ENSE00001374459
X:70775804-70775944
141
OGT1_HUMAN
309-355
47
2
A:299-345
B:299-345 (gaps)
47
47
1.11c
ENST00000373719
11c
ENSE00001371885
X:70776530-70776630
101
OGT1_HUMAN
356-389
34
2
A:346-379
B:346-379
34
34
1.12c
ENST00000373719
12c
ENSE00001387530
X:70776802-70776955
154
OGT1_HUMAN
389-440
52
2
A:379-400
B:379-400
22
22
1.13
ENST00000373719
13
ENSE00001386377
X:70777045-70777146
102
OGT1_HUMAN
441-474
34
0
-
-
1.14
ENST00000373719
14
ENSE00001373577
X:70777343-70777522
180
OGT1_HUMAN
475-534
60
0
-
-
1.15
ENST00000373719
15
ENSE00001371266
X:70779117-70779275
159
OGT1_HUMAN
535-587
53
0
-
-
1.16
ENST00000373719
16
ENSE00000979031
X:70779438-70779527
90
OGT1_HUMAN
588-617
30
0
-
-
1.17
ENST00000373719
17
ENSE00000979032
X:70781625-70781750
126
OGT1_HUMAN
618-659
42
0
-
-
1.18
ENST00000373719
18
ENSE00000979033
X:70782697-70782867
171
OGT1_HUMAN
660-716
57
0
-
-
1.19
ENST00000373719
19
ENSE00000979034
X:70782980-70783096
117
OGT1_HUMAN
717-755
39
0
-
-
1.20
ENST00000373719
20
ENSE00001385236
X:70783179-70783349
171
OGT1_HUMAN
756-812
57
0
-
-
1.21a
ENST00000373719
21a
ENSE00001368007
X:70784451-70784603
153
OGT1_HUMAN
813-863
51
0
-
-
1.22a
ENST00000373719
22a
ENSE00001389126
X:70787350-70787602
253
OGT1_HUMAN
864-948
85
0
-
-
1.23
ENST00000373719
23
ENSE00001160190
X:70787843-70787966
124
OGT1_HUMAN
948-989
42
0
-
-
1.24d
ENST00000373719
24d
ENSE00001820698
X:70793470-70795747
2278
OGT1_HUMAN
989-1046
58
0
-
-
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1w3ba_ (A:)
1b: SCOP_d1w3bb_ (B:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
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(
)
Superfamilies
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)
(
)
Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
alpha-alpha superhelix
(690)
Superfamily
:
TPR-like
(83)
Family
:
Tetratricopeptide repeat (TPR)
(47)
Protein domain
:
O-GlcNAc transferase, OGT
(2)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1w3ba_
A:
1b
d1w3bb_
B:
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(2, 18)
Info
all PFAM domains
1a: PFAM_TPR_1_1w3bB01 (B:385-390)
1b: PFAM_TPR_1_1w3bB02 (B:385-390)
1c: PFAM_TPR_1_1w3bB03 (B:385-390)
1d: PFAM_TPR_1_1w3bB04 (B:385-390)
1e: PFAM_TPR_1_1w3bB05 (B:385-390)
1f: PFAM_TPR_1_1w3bB06 (B:385-390)
1g: PFAM_TPR_1_1w3bB07 (B:385-390)
1h: PFAM_TPR_1_1w3bB08 (B:385-390)
1i: PFAM_TPR_1_1w3bB09 (B:385-390)
1j: PFAM_TPR_1_1w3bB10 (B:385-390)
1k: PFAM_TPR_1_1w3bB11 (B:385-390)
1l: PFAM_TPR_1_1w3bB12 (B:385-390)
1m: PFAM_TPR_1_1w3bB13 (B:385-390)
1n: PFAM_TPR_1_1w3bB14 (B:385-390)
1o: PFAM_TPR_1_1w3bB15 (B:385-390)
1p: PFAM_TPR_1_1w3bB16 (B:385-390)
2a: PFAM_TPR_11_1w3bB17 (B:77-144)
2b: PFAM_TPR_11_1w3bB18 (B:77-144)
View:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
TPR
(230)
Family
:
TPR_1
(18)
Homo sapiens (Human)
(11)
1a
TPR_1-1w3bB01
B:385-390
1b
TPR_1-1w3bB02
B:385-390
1c
TPR_1-1w3bB03
B:385-390
1d
TPR_1-1w3bB04
B:385-390
1e
TPR_1-1w3bB05
B:385-390
1f
TPR_1-1w3bB06
B:385-390
1g
TPR_1-1w3bB07
B:385-390
1h
TPR_1-1w3bB08
B:385-390
1i
TPR_1-1w3bB09
B:385-390
1j
TPR_1-1w3bB10
B:385-390
1k
TPR_1-1w3bB11
B:385-390
1l
TPR_1-1w3bB12
B:385-390
1m
TPR_1-1w3bB13
B:385-390
1n
TPR_1-1w3bB14
B:385-390
1o
TPR_1-1w3bB15
B:385-390
1p
TPR_1-1w3bB16
B:385-390
Family
:
TPR_11
(16)
Homo sapiens (Human)
(2)
2a
TPR_11-1w3bB17
B:77-144
2b
TPR_11-1w3bB18
B:77-144
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