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Asym. Unit
Info
Asym.Unit (103 KB)
Biol.Unit 1 (50 KB)
Biol.Unit 2 (49 KB)
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(1)
Title
:
HUMAN INOSITOL (1,4,5)-TRISPHOSPHATE 3-KINASE SUBSTITUTED WITH SELENOMETHIONINE
Authors
:
B. Gonzalez, M. J. Schell, R. F. Irvine, R. L. Williams
Date
:
01 Jul 04 (Deposition) - 09 Sep 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Inositol Phosphate Kinase, Transferase, Calmodulin-Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Gonzalez, M. J. Schell, A. J. Letcher, D. B. Veprintsev, R. F. Irvine R. L. Williams
Structure Of A Human Inositol 1, 4, 5-Trisphosphate 3-Kinase; Substrate Binding Reveals Why It Is Not A Phosphoinositide 3-Kinase
Mol. Cell V. 15 689 2004
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Hetero Components
(2, 16)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1b: SELENOMETHIONINE (MSEb)
1c: SELENOMETHIONINE (MSEc)
1d: SELENOMETHIONINE (MSEd)
1e: SELENOMETHIONINE (MSEe)
1f: SELENOMETHIONINE (MSEf)
1g: SELENOMETHIONINE (MSEg)
1h: SELENOMETHIONINE (MSEh)
1i: SELENOMETHIONINE (MSEi)
1j: SELENOMETHIONINE (MSEj)
1k: SELENOMETHIONINE (MSEk)
1l: SELENOMETHIONINE (MSEl)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
View:
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Label:
No.
Name
Count
Type
Full Name
1
MSE
12
Mod. Amino Acid
SELENOMETHIONINE
2
SO4
4
Ligand/Ion
SULFATE ION
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:264 , LYS A:312 , LYS A:419 , HOH A:2026 , HOH A:2125
BINDING SITE FOR RESIDUE SO4 A1462
2
AC2
SOFTWARE
ARG A:285 , MSE A:288 , LYS A:312
BINDING SITE FOR RESIDUE SO4 A1463
3
AC3
SOFTWARE
TYR A:315 , ARG A:319 , HOH A:2144 , HOH A:2145
BINDING SITE FOR RESIDUE SO4 A1464
4
AC4
SOFTWARE
LYS B:291 , TYR B:315 , ARG B:319
BINDING SITE FOR RESIDUE SO4 B1462
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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;
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Exons
(6, 12)
Info
All Exons
Exon 1.3b (A:186-196 | B:186-192)
Exon 1.4a (A:196-268 | B:197-268)
Exon 1.5 (A:268-336 | B:268-336)
Exon 1.6b (A:337-370 | B:337-370)
Exon 1.7 (A:371-394 | B:371-394)
Exon 1.8b (A:395-461 | B:395-461)
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All Exon Boundaries
1: Boundary 1.2a/1.3b
2: Boundary 1.3b/1.4a
3: Boundary 1.4a/1.5
4: Boundary 1.5/1.6b
5: Boundary 1.6b/1.7
6: Boundary 1.7/1.8b
7: Boundary 1.8b/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2a
ENST00000260386
2a
ENSE00001206292
chr15:
41786059-41786614
556
IP3KA_HUMAN
1-163
163
0
-
-
1.3b
ENST00000260386
3b
ENSE00000931025
chr15:
41793661-41793757
97
IP3KA_HUMAN
164-196
33
2
A:186-196
B:186-192
11
7
1.4a
ENST00000260386
4a
ENSE00000931026
chr15:
41793833-41794049
217
IP3KA_HUMAN
196-268
73
2
A:196-268
B:197-268
73
72
1.5
ENST00000260386
5
ENSE00000931027
chr15:
41794195-41794399
205
IP3KA_HUMAN
268-336
69
2
A:268-336
B:268-336
69
69
1.6b
ENST00000260386
6b
ENSE00000931028
chr15:
41794600-41794701
102
IP3KA_HUMAN
337-370
34
2
A:337-370
B:337-370
34
34
1.7
ENST00000260386
7
ENSE00000931029
chr15:
41794986-41795057
72
IP3KA_HUMAN
371-394
24
2
A:371-394
B:371-394
24
24
1.8b
ENST00000260386
8b
ENSE00000931030
chr15:
41795161-41795749
589
IP3KA_HUMAN
395-461
67
2
A:395-461
B:395-461
67
67
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1w2fa_ (A:)
1b: SCOP_d1w2fb_ (B:)
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Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
SAICAR synthase-like
(28)
Superfamily
:
SAICAR synthase-like
(28)
Family
:
Inositol polyphosphate kinase (IPK)
(6)
Protein domain
:
Inositol 1,4,5-trisphosphate 3-kinase A, IP3K A
(4)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d1w2fa_
A:
1b
d1w2fb_
B:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_IPK_1w2fB01 (B:245-456)
1b: PFAM_IPK_1w2fB02 (B:245-456)
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Clan
:
no clan defined [family: IPK]
(3)
Family
:
IPK
(3)
Homo sapiens (Human)
(2)
1a
IPK-1w2fB01
B:245-456
1b
IPK-1w2fB02
B:245-456
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Asymmetric Unit 1
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Asym.Unit (103 KB)
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