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1W1Z
Asym. Unit
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Asym.Unit (112 KB)
Biol.Unit 1 (421 KB)
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(1)
Title
:
STRUCTURE OF THE PLANT LIKE 5-AMINO LAEVULINIC ACID DEHYDRATASE FROM CHLOROBIUM VIBRIOFORME
Authors
:
L. Coates, G. Beaven, P. T. Erskine, S. I. Beale, Y. J. Avissar, R. Gill, F. Mohammed, S. P. Wood, P. Shoolingin-Jordan, J. B. Cooper
Date
:
24 Jun 04 (Deposition) - 02 Sep 04 (Release) - 28 Dec 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (4x)
Keywords
:
Synthase, Tetrapyrrole Biosynthesis, Alad, Porphyrin Biosynthesis, Heme Biosynthesis, Lyase, Magnesium
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Reference
:
L. Coates, G. Beaven, P. T. Erskine, S. I. Beale, Y. J. Avissar, R. Gill, F. Mohammed, S. P. Wood, P. Shoolingin-Jordan, J. B. Cooper
The X-Ray Structure Of The Plant Like 5-Aminolaevulinic Acid Dehydratase From Chlorobium Vibrioforme Complexed With The Inhibitor Laevulinic Acid At 2. 6A Resolution
J. Mol. Biol. V. 342 563 2004
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: MAGNESIUM ION (MGa)
1b: MAGNESIUM ION (MGb)
2a: LAEVULINIC ACID (SHFa)
2b: LAEVULINIC ACID (SHFb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
MG
2
Ligand/Ion
MAGNESIUM ION
2
SHF
2
Ligand/Ion
LAEVULINIC ACID
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU A:238 , HOH A:2086 , HOH A:2087 , HOH A:2089 , HOH A:2119 , HOH A:2120
BINDING SITE FOR RESIDUE MG A1329
2
AC2
SOFTWARE
GLU B:238 , HOH B:2111 , HOH B:2115 , HOH B:2141 , HOH B:2142
BINDING SITE FOR RESIDUE MG B1329
3
AC3
SOFTWARE
PHE A:209 , LYS A:253 , TYR A:276 , VAL A:278 , SER A:279 , TYR A:318
BINDING SITE FOR RESIDUE SHF A1253
4
AC4
SOFTWARE
TYR B:206 , PHE B:209 , LYS B:253 , TYR B:276 , VAL B:278 , SER B:279 , TYR B:318
BINDING SITE FOR RESIDUE SHF B1253
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: D_ALA_DEHYDRATASE (A:246-258,B:246-258)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
D_ALA_DEHYDRATASE
PS00169
Delta-aminolevulinic acid dehydratase active site.
HEM2_CHLP8
246-258
2
A:246-258
B:246-258
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1w1za_ (A:)
1b: SCOP_d1w1zb_ (B:)
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Aldolase
(457)
Family
:
5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase)
(36)
Protein domain
:
5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase)
(21)
Prosthecochloris vibrioformis [TaxId: 1098]
(2)
1a
d1w1za_
A:
1b
d1w1zb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1w1zA00 (A:10-328)
1b: CATH_1w1zB00 (B:10-328)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Aldolase class I
(887)
Prosthecochloris vibrioformis. Organism_taxid: 1098.
(1)
1a
1w1zA00
A:10-328
1b
1w1zB00
B:10-328
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_ALAD_1w1zB01 (B:10-327)
1b: PFAM_ALAD_1w1zB02 (B:10-327)
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Clan
:
TIM_barrel
(694)
Family
:
ALAD
(17)
Chlorobaculum parvum (strain NCIB 8327) (Chlorobium vibrioforme subsp. thiosulfatophilum (strain DSM
(1)
1a
ALAD-1w1zB01
B:10-327
1b
ALAD-1w1zB02
B:10-327
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Asym.Unit (112 KB)
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