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1W1G
Asym. Unit
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Asym.Unit (63 KB)
Biol.Unit 1 (58 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE PDK1 PLECKSTRIN HOMOLOGY (PH) DOMAIN BOUND TO DIC4-PHOSPHATIDYLINOSITOL (3,4,5)-TRISPHOSPHATE
Authors
:
D. Komander, M. Deak, D. R. Alessi, D. M. F. Van Aalten
Date
:
21 Jun 04 (Deposition) - 19 Nov 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.45
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Transferase, Pdk1, Phosphoinositide Dependent Protein Kinase 1, Pkb, Pleckstrin Homology Domain, Inositol Phosphate, Phosphoinositide, Signal Transduction, Pi3-Kinase, Pip3 Serine/Threonine Protein Kinase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
D. Komander, A. Fairservice, M. Deak, G. S. Kular, A. R. Prescott, C. P. Downes, S. T. Safrany, D. R. Alessi, D. M. F. Van Aalten
Structural Insights Into The Regulation Of Pdk1 By Phosphoinositides And Inositol Phosphates
Embo J. V. 23 3918 2004
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: (2R)-3-{[(S)-{[(2S,3R,5S,6S)-2,6-D... (4PTa)
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No.
Name
Count
Type
Full Name
1
4PT
1
Ligand/Ion
(2R)-3-{[(S)-{[(2S,3R,5S,6S)-2,6-DIHYDROXY-3,4,5-TRIS(PHOSPHONOOXY)CYCLOHEXYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-2-(1-HYDROXYBUTOXY)PROPYLBUTYRATE
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:417 , LEU A:419 , LYS A:465 , LYS A:467 , ARG A:472 , ARG A:474 , TYR A:486 , LYS A:495 , ARG A:521 , HOH A:2029 , HOH A:2084 , HOH A:2155 , HOH A:2156 , HOH A:2157
BINDING SITE FOR RESIDUE 4PT A1550
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(4, 4)
Info
All Exons
Exon 1.17 (A:407-448 (gaps))
Exon 1.18 (A:448-467)
Exon 1.19 (A:468-518)
Exon 1.20b (A:519-550)
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All Exon Boundaries
1: Boundary 1.16a/1.17
2: Boundary 1.17/1.18
3: Boundary 1.18/1.19
4: Boundary 1.19/1.20b
5: Boundary 1.20b/-
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000342085
1a
ENSE00001944688
chr16:
2587965-2588137
173
PDPK1_HUMAN
1-8
8
0
-
-
1.6c
ENST00000342085
6c
ENSE00001640744
chr16:
2607704-2607964
261
PDPK1_HUMAN
9-95
87
0
-
-
1.7
ENST00000342085
7
ENSE00001620065
chr16:
2611481-2611523
43
PDPK1_HUMAN
96-110
15
0
-
-
1.8b
ENST00000342085
8b
ENSE00001694535
chr16:
2611772-2611909
138
PDPK1_HUMAN
110-156
47
0
-
-
1.9b
ENST00000342085
9b
ENSE00001744256
chr16:
2615554-2615698
145
PDPK1_HUMAN
156-204
49
0
-
-
1.10a
ENST00000342085
10a
ENSE00001705748
chr16:
2616357-2616454
98
PDPK1_HUMAN
204-237
34
0
-
-
1.13
ENST00000342085
13
ENSE00001704745
chr16:
2627426-2627501
76
PDPK1_HUMAN
237-262
26
0
-
-
1.14
ENST00000342085
14
ENSE00001686272
chr16:
2631296-2631364
69
PDPK1_HUMAN
262-285
24
0
-
-
1.15b
ENST00000342085
15b
ENSE00001743545
chr16:
2631608-2631704
97
PDPK1_HUMAN
285-317
33
0
-
-
1.16a
ENST00000342085
16a
ENSE00001314244
chr16:
2633413-2633586
174
PDPK1_HUMAN
318-375
58
0
-
-
1.17
ENST00000342085
17
ENSE00000946017
chr16:
2636677-2636894
218
PDPK1_HUMAN
376-448
73
1
A:407-448 (gaps)
44
1.18
ENST00000342085
18
ENSE00000946018
chr16:
2645794-2645851
58
PDPK1_HUMAN
448-467
20
1
A:448-467
20
1.19
ENST00000342085
19
ENSE00000946019
chr16:
2647124-2647276
153
PDPK1_HUMAN
468-518
51
1
A:468-518
51
1.20b
ENST00000342085
20b
ENSE00001505218
chr16:
2647652-2653189
5538
PDPK1_HUMAN
519-556
38
1
A:519-550
32
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1w1ga_ (A:)
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Protein Domains
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)
(
)
Organisms
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)
(
)
Class
:
All beta proteins
(24004)
Fold
:
PH domain-like barrel
(258)
Superfamily
:
PH domain-like
(257)
Family
:
Pleckstrin-homology domain (PH domain)
(102)
Protein domain
:
3-phosphoinositide dependent protein kinase-1
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d1w1ga_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1w1gA00 (A:407-550)
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Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
PH-domain like
(150)
Homologous Superfamily
:
Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)
(147)
Human (Homo sapiens)
(85)
1a
1w1gA00
A:407-550
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Pfam Domains
(0, 0)
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Chain A
Asymmetric Unit 1
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