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1W1E
Theor. Model
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Theoretical Model (302 KB)
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(1)
Title
:
MITOCHONDRIAL HUMAN THIOREDOXIN REDUCTASE IN COMPLEX WITH THIOREDOXIN
Authors
:
W. Brandt, L. A. Wessjohann
Date
:
21 Jun 04 (Deposition) - 19 Jan 05 (Release) - 28 Oct 05 (Revision)
Method
:
THEORETICAL MODEL
Resolution
:
NOT APPLICABLE
Chains
:
Theor. Model : A,B,C
Keywords
:
Thioredoxin Reductase, Thioredoxin, Fad, Nadp, Oxidoreductase, Selenocysteine, Redox-Active Center, Flavoprotein, Direct Protein Sequencing, Cse, Electron Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
W. Brandt, L. Wessjohann
The Functional Role Of Selenocysteine (Sec) In The Catalysis Mechanism Of Large Thioredoxin Reductases: Proposition Of A Swapping Catalytic Triad Including A Sec-His-Glu State
To Be Published
(for further references see the
PDB file header
)
[
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Hetero Components
(3, 6)
Info
All Hetero Components
1a: SELENOCYSTEINE (CSEa)
1b: SELENOCYSTEINE (CSEb)
2a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
2b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
3a: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPa)
3b: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CSE
2
Mod. Amino Acid
SELENOCYSTEINE
2
FAD
2
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
3
NDP
2
Ligand/Ion
NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
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Sites
(0, 0)
Info
All Sites
View:
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Label:
Sorry, no Info available
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]
SAPs(SNPs)/Variants
(3, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_051778 (A41S, chain A/B, )
2: VAR_051779 (S274R, chain A/B, )
3: VAR_051780 (I345T, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_051778
A
66
S
TRXR2_HUMAN
Polymorphism
5748469
A/B
A
41
S
2
UniProt
VAR_051779
S
299
R
TRXR2_HUMAN
Polymorphism
5992495
A/B
S
274
R
3
UniProt
VAR_051780
I
370
T
TRXR2_HUMAN
Polymorphism
1139793
A/B
I
345
T
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(3, 4)
Info
All PROSITE Patterns/Profiles
1: THIOREDOXIN_2 (C:1-105)
2: THIOREDOXIN_1 (C:24-42)
3: PYRIDINE_REDOX_1 (A:58-68,B:58-68)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
THIOREDOXIN_2
PS51352
Thioredoxin domain profile.
THIO_HUMAN
1-105
1
C:1-105
2
THIOREDOXIN_1
PS00194
Thioredoxin family active site.
THIO_HUMAN
24-42
1
C:24-42
3
PYRIDINE_REDOX_1
PS00076
Pyridine nucleotide-disulphide oxidoreductases class-I active site.
TRXR2_HUMAN
83-93
2
A:58-68
B:58-68
[
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Exons
(21, 37)
Info
All Exons
Exon 1.1a (C:1-8)
Exon 1.2 (C:9-43)
Exon 1.3 (C:44-63)
Exon 1.4b (C:64-85)
Exon 1.5b (C:86-105)
Exon 2.4a (A:11-33 | B:11-33)
Exon 2.5 (A:33-52 | B:33-52)
Exon 2.6 (A:52-100 | B:52-100)
Exon 2.7b (A:100-125 | B:100-125)
Exon 2.8b (A:125-151 | B:125-151)
Exon 2.9a (A:152-172 | B:152-172)
Exon 2.10a (A:173-196 | B:173-196)
Exon 2.12 (A:196-203 | B:196-203)
Exon 2.13b (A:203-233 | B:203-233)
Exon 2.14 (A:234-292 | B:234-292)
Exon 2.16b (A:292-337 | B:292-337)
Exon 2.17f (A:338-369 | B:338-369)
Exon 2.18 (A:370-400 | B:370-400)
Exon 2.19 (A:401-424 | B:401-424)
Exon 2.20 (A:425-457 | B:425-457)
Exon 2.21b (A:457-499 | B:457-499)
View:
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All Exon Boundaries
01: Boundary -/1.1a
02: Boundary 1.1a/1.2
03: Boundary 1.2/1.3
04: Boundary 1.3/1.4b
05: Boundary 1.4b/1.5b
06: Boundary 1.5b/-
07: Boundary 2.1b/2.4a
08: Boundary 2.4a/2.5
09: Boundary 2.5/2.6
10: Boundary 2.6/2.7b
11: Boundary 2.7b/2.8b
12: Boundary 2.8b/2.9a
13: Boundary 2.9a/2.10a
14: Boundary 2.10a/2.12
15: Boundary 2.12/2.13b
16: Boundary 2.13b/2.14
17: Boundary 2.14/2.16b
18: Boundary 2.16b/2.17f
19: Boundary 2.17f/2.18
20: Boundary 2.18/2.19
21: Boundary 2.19/2.20
22: Boundary 2.20/2.21b
23: Boundary 2.21b/2.21j
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000374517
1a
ENSE00001463713
chr9:
113018920-113018692
229
THIO_HUMAN
1-8
8
1
C:1-8
8
1.2
ENST00000374517
2
ENSE00000806083
chr9:
113013742-113013638
105
THIO_HUMAN
9-43
35
1
C:9-43
35
1.3
ENST00000374517
3
ENSE00000806082
chr9:
113013159-113013100
60
THIO_HUMAN
44-63
20
1
C:44-63
20
1.4b
ENST00000374517
4b
ENSE00000806081
chr9:
113007123-113007058
66
THIO_HUMAN
64-85
22
1
C:64-85
22
1.5b
ENST00000374517
5b
ENSE00001945358
chr9:
113006499-113006091
409
THIO_HUMAN
86-105
20
1
C:86-105
20
2.1b
ENST00000400521
1b
ENSE00001543323
chr22:
19929333-19929224
110
TRXR2_HUMAN
1-35
35
0
-
-
2.4a
ENST00000400521
4a
ENSE00001344032
chr22:
19918621-19918553
69
TRXR2_HUMAN
35-58
24
2
A:11-33
B:11-33
23
23
2.5
ENST00000400521
5
ENSE00001712467
chr22:
19907122-19907066
57
TRXR2_HUMAN
58-77
20
2
A:33-52
B:33-52
20
20
2.6
ENST00000400521
6
ENSE00001649161
chr22:
19906527-19906383
145
TRXR2_HUMAN
77-125
49
2
A:52-100
B:52-100
49
49
2.7b
ENST00000400521
7b
ENSE00001803882
chr22:
19905740-19905666
75
TRXR2_HUMAN
125-150
26
2
A:100-125
B:100-125
26
26
2.8b
ENST00000400521
8b
ENSE00001700288
chr22:
19903366-19903288
79
TRXR2_HUMAN
150-176
27
2
A:125-151
B:125-151
27
27
2.9a
ENST00000400521
9a
ENSE00001772418
chr22:
19902799-19902737
63
TRXR2_HUMAN
177-197
21
2
A:152-172
B:152-172
21
21
2.10a
ENST00000400521
10a
ENSE00001639097
chr22:
19898970-19898900
71
TRXR2_HUMAN
198-221
24
2
A:173-196
B:173-196
24
24
2.12
ENST00000400521
12
ENSE00001703902
chr22:
19886591-19886572
20
TRXR2_HUMAN
221-228
8
2
A:196-203
B:196-203
8
8
2.13b
ENST00000400521
13b
ENSE00001689972
chr22:
19885653-19885562
92
TRXR2_HUMAN
228-258
31
2
A:203-233
B:203-233
31
31
2.14
ENST00000400521
14
ENSE00001301692
chr22:
19883104-19882930
175
TRXR2_HUMAN
259-317
59
2
A:234-292
B:234-292
59
59
2.16b
ENST00000400521
16b
ENSE00001325883
chr22:
19870984-19870848
137
TRXR2_HUMAN
317-362
46
2
A:292-337
B:292-337
46
46
2.17f
ENST00000400521
17f
ENSE00001305592
chr22:
19868240-19868145
96
TRXR2_HUMAN
363-394
32
2
A:338-369
B:338-369
32
32
2.18
ENST00000400521
18
ENSE00001298332
chr22:
19867794-19867702
93
TRXR2_HUMAN
395-425
31
2
A:370-400
B:370-400
31
31
2.19
ENST00000400521
19
ENSE00001319621
chr22:
19865960-19865889
72
TRXR2_HUMAN
426-449
24
2
A:401-424
B:401-424
24
24
2.20
ENST00000400521
20
ENSE00001323000
chr22:
19865710-19865613
98
TRXR2_HUMAN
450-482
33
2
A:425-457
B:425-457
33
33
2.21b
ENST00000400521
21b
ENSE00001302661
chr22:
19864757-19864563
195
TRXR2_HUMAN
482-524
43
2
A:457-499
B:457-499
43
43
2.21j
ENST00000400521
21j
ENSE00001543330
chr22:
19863330-19863045
286
TRXR2_HUMAN
-
0
0
-
-
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SCOP Domains
(0, 0)
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(0, 0)
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all CATH domains
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Pfam Domains
(0, 0)
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Sorry, no Info available
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