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1W0H
Asym. Unit
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Asym.Unit (48 KB)
Biol.Unit 1 (43 KB)
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(1)
Title
:
CRYSTALLOGRAPHIC STRUCTURE OF THE NUCLEASE DOMAIN OF 3'HEXO, A DEDDH FAMILY MEMBER, BOUND TO RAMP
Authors
:
Y. Cheng, D. Patel
Date
:
04 Jun 04 (Deposition) - 30 Sep 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.59
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Nuclease Domain, Hydrolase, Nuclease, Exonuclease
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
Y. Cheng, D. Patel
Crystallographic Structure Of The Nuclease Domain Of 3'Hexo, A Deddh Family Member, Bound To Ramp
J. Mol. Biol. V. 343 305 2004
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Hetero Components
(3, 9)
Info
All Hetero Components
1a: ADENOSINE MONOPHOSPHATE (AMPa)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
3a: SELENOMETHIONINE (MSEa)
3b: SELENOMETHIONINE (MSEb)
3c: SELENOMETHIONINE (MSEc)
3d: SELENOMETHIONINE (MSEd)
3e: SELENOMETHIONINE (MSEe)
3f: SELENOMETHIONINE (MSEf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AMP
1
Ligand/Ion
ADENOSINE MONOPHOSPHATE
2
MG
2
Ligand/Ion
MAGNESIUM ION
3
MSE
6
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:134 , ASP A:234 , MG A:1001 , AMP A:1002 , HOH A:2020 , HOH A:2242
BINDING SITE FOR RESIDUE MG A1000
2
AC2
SOFTWARE
ASP A:134 , GLU A:136 , ASP A:298 , MG A:1000 , AMP A:1002
BINDING SITE FOR RESIDUE MG A1001
3
AC3
SOFTWARE
ASP A:134 , PHE A:135 , GLU A:136 , ALA A:137 , THR A:138 , CYS A:139 , PHE A:185 , ASP A:234 , PHE A:238 , HIS A:293 , ASP A:298 , MG A:1000 , MG A:1001 , HOH A:2020 , HOH A:2035 , HOH A:2365 , HOH A:2366 , HOH A:2367 , HOH A:2370
BINDING SITE FOR RESIDUE AMP A1002
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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End label:
Sorry, no Info available
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Exons
(5, 5)
Info
All Exons
Exon 1.6a (A:123-166)
Exon 1.7a (A:167-194)
Exon 1.8b (A:195-231)
Exon 1.9a (A:231-269)
Exon 1.10b (A:270-322)
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All Exon Boundaries
1: Boundary 1.4b/1.6a
2: Boundary 1.6a/1.7a
3: Boundary 1.7a/1.8b
4: Boundary 1.8b/1.9a
5: Boundary 1.9a/1.10b
6: Boundary 1.10b/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2b
ENST00000250263
2b
ENSE00001019501
chr8:
8860314-8860681
368
ERI1_HUMAN
1-36
36
0
-
-
1.4b
ENST00000250263
4b
ENSE00001019499
chr8:
8865480-8865658
179
ERI1_HUMAN
37-96
60
0
-
-
1.6a
ENST00000250263
6a
ENSE00001019497
chr8:
8869052-8869262
211
ERI1_HUMAN
96-166
71
1
A:123-166
44
1.7a
ENST00000250263
7a
ENSE00001019504
chr8:
8873832-8873915
84
ERI1_HUMAN
167-194
28
1
A:167-194
28
1.8b
ENST00000250263
8b
ENSE00000924781
chr8:
8875807-8875916
110
ERI1_HUMAN
195-231
37
1
A:195-231
37
1.9a
ENST00000250263
9a
ENSE00000924782
chr8:
8877860-8877974
115
ERI1_HUMAN
231-269
39
1
A:231-269
39
1.10b
ENST00000250263
10b
ENSE00001533120
chr8:
8887302-8890848
3547
ERI1_HUMAN
270-349
80
1
A:270-322
53
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1w0ha_ (A:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ribonuclease H-like motif
(1424)
Superfamily
:
Ribonuclease H-like
(775)
Family
:
DnaQ-like 3'-5' exonuclease
(253)
Protein domain
:
Exonuclease ERI1
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1w0ha_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1w0hA00 (A:123-321)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Nucleotidyltransferase; domain 5
(788)
Homologous Superfamily
:
[code=3.30.420.10, no name defined]
(372)
Human (Homo sapiens)
(2)
1a
1w0hA00
A:123-321
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_RNase_T_1w0hA01 (A:131-306)
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Clan
:
RNase_H
(288)
Family
:
RNase_T
(14)
Homo sapiens (Human)
(6)
1a
RNase_T-1w0hA01
A:131-306
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Chain A
Asymmetric Unit 1
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