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1W07
Asym. Unit
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Asym.Unit (233 KB)
Biol.Unit 1 (226 KB)
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(1)
Title
:
ARABIDOPSIS THALIANA ACYL-COA OXIDASE 1
Authors
:
A. Henriksen, L. Pedersen
Date
:
01 Jun 04 (Deposition) - 15 Dec 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Oxidoreductase, Peroxisomal Beta-Oxidation, Fad Cofactor
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Pedersen, A. Henriksen
Acyl-Coa Oxidase 1 From Arabidopsis Thaliana. Structure Of A Key Enzyme In Plant Lipid Metabolism
J. Mol. Biol. V. 345 487 2005
(for further references see the
PDB file header
)
[
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]
Hetero Components
(4, 11)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
3a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
3b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
4a: PLATINUM (II) ION (PTa)
4b: PLATINUM (II) ION (PTb)
4c: PLATINUM (II) ION (PTc)
4d: PLATINUM (II) ION (PTd)
4e: PLATINUM (II) ION (PTe)
4f: PLATINUM (II) ION (PTf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
1
Ligand/Ion
CALCIUM ION
2
CL
2
Ligand/Ion
CHLORIDE ION
3
FAD
2
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
4
PT
6
Ligand/Ion
PLATINUM (II) ION
[
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]
Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:6 , ASP A:9 , HOH A:2009 , HOH A:2014 , HOH A:2016 , ASN B:12 , HOH B:2008
BINDING SITE FOR RESIDUE CA A1661
02
AC2
SOFTWARE
ASN A:231 , GLY B:230
BINDING SITE FOR RESIDUE CL A1662
03
AC3
SOFTWARE
MET A:256 , HOH A:2113
BINDING SITE FOR RESIDUE PT A1663
04
AC4
SOFTWARE
GLU A:2 , HIS A:6 , ASN A:624 , HOH A:2003 , HOH A:2011
BINDING SITE FOR RESIDUE PT A1664
05
AC5
SOFTWARE
MET A:281 , HIS A:374
BINDING SITE FOR RESIDUE PT A1665
06
AC6
SOFTWARE
GLY A:230 , ASN B:231 , HOH B:2251
BINDING SITE FOR RESIDUE CL B1661
07
AC7
SOFTWARE
MET B:256 , HOH B:2189
BINDING SITE FOR RESIDUE PT B1662
08
AC8
SOFTWARE
HIS B:6
BINDING SITE FOR RESIDUE PT B1663
09
AC9
SOFTWARE
MET B:281 , ARG B:285 , HIS B:374
BINDING SITE FOR RESIDUE PT B1664
10
BC1
SOFTWARE
LEU A:101 , TYR A:135 , GLN A:137 , THR A:138 , GLY A:143 , SER A:144 , TRP A:175 , PRO A:176 , GLY A:177 , ASN A:239 , PRO A:419 , THR A:422 , TYR A:423 , GLU A:424 , ASP A:426 , VAL A:428 , VAL A:429 , LEU A:432 , HOH A:2117 , HOH A:2360 , HOH A:2361 , HOH A:2362 , HOH A:2363 , ARG B:310 , GLN B:312 , PHE B:313 , VAL B:324 , TYR B:327 , THR B:329 , GLN B:330 , ARG B:333 , LEU B:398 , GLY B:401 , HOH B:2197
BINDING SITE FOR RESIDUE FAD A1660
11
BC2
SOFTWARE
ARG A:310 , GLN A:312 , PHE A:313 , VAL A:324 , TYR A:327 , THR A:329 , GLN A:330 , ARG A:333 , LEU A:398 , GLY A:400 , GLY A:401 , HOH A:2222 , LEU B:101 , TYR B:135 , GLN B:137 , THR B:138 , GLY B:143 , SER B:144 , TRP B:175 , PRO B:176 , GLY B:177 , ASN B:239 , PRO B:419 , THR B:422 , TYR B:423 , GLU B:424 , ASP B:426 , VAL B:428 , VAL B:429 , LEU B:432 , HOH B:2119 , HOH B:2257 , HOH B:2381 , HOH B:2382 , HOH B:2383 , HOH B:2385
BINDING SITE FOR RESIDUE FAD B1660
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d1w07a1 (A:273-461)
1b: SCOP_d1w07a2 (A:462-659)
1c: SCOP_d1w07b1 (B:273-461)
1d: SCOP_d1w07b2 (B:462-659)
2a: SCOP_d1w07a3 (A:2-272)
2b: SCOP_d1w07b3 (B:2-272)
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)
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)
(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Bromodomain-like
(339)
Superfamily
:
Acyl-CoA dehydrogenase C-terminal domain-like
(61)
Family
:
acyl-CoA oxidase C-terminal domains
(3)
Protein domain
:
Acyl-coenzyme A oxidase 1, domains 3 and 4
(1)
Thale cress (Arabidopsis thaliana) [TaxId: 3702]
(1)
1a
d1w07a1
A:273-461
1b
d1w07a2
A:462-659
1c
d1w07b1
B:273-461
1d
d1w07b2
B:462-659
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
Acyl-CoA dehydrogenase NM domain-like
(61)
Superfamily
:
Acyl-CoA dehydrogenase NM domain-like
(61)
Family
:
acyl-CoA oxidase N-terminal domains
(3)
Protein domain
:
Acyl-coenzyme A oxidase 1, domains 1 and 2
(1)
Thale cress (Arabidopsis thaliana) [TaxId: 3702]
(1)
2a
d1w07a3
A:2-272
2b
d1w07b3
B:2-272
[
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CATH Domains
(2, 6)
Info
all CATH domains
1a: CATH_1w07A03 (A:279-449)
1b: CATH_1w07B03 (B:279-449)
1c: CATH_1w07A04 (A:480-608)
1d: CATH_1w07B04 (B:480-608)
2a: CATH_1w07A02 (A:133-269)
2b: CATH_1w07B02 (B:133-269)
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)
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)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Butyryl-CoA Dehydrogenase, subunit A; domain 3
(76)
Homologous Superfamily
:
Butyryl-CoA Dehydrogenase, subunit A, domain 3
(37)
Mouse-ear cress (Arabidopsis thaliana)
(1)
1a
1w07A03
A:279-449
1b
1w07B03
B:279-449
1c
1w07A04
A:480-608
1d
1w07B04
B:480-608
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Butyryl-CoA Dehydrogenase, subunit A; domain 2
(35)
Homologous Superfamily
:
Butyryl-CoA Dehydrogenase, subunit A, domain 2
(35)
Mouse-ear cress (Arabidopsis thaliana)
(1)
2a
1w07A02
A:133-269
2b
1w07B02
B:133-269
[
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_ACOX_1w07B01 (B:476-658)
1b: PFAM_ACOX_1w07B02 (B:476-658)
2a: PFAM_Acyl_CoA_dh_M_1w07B03 (B:134-194)
2b: PFAM_Acyl_CoA_dh_M_1w07B04 (B:134-194)
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Clans
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(
)
Families
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)
(
)
Organisms
(
)
(
)
Clan
:
Acyl-CoA_dh
(32)
Family
:
ACOX
(1)
Arabidopsis thaliana (Mouse-ear cress)
(1)
1a
ACOX-1w07B01
B:476-658
1b
ACOX-1w07B02
B:476-658
Clan
:
no clan defined [family: Acyl-CoA_dh_M]
(24)
Family
:
Acyl-CoA_dh_M
(24)
Arabidopsis thaliana (Mouse-ear cress)
(1)
2a
Acyl-CoA_dh_M-1w07B03
B:134-194
2b
Acyl-CoA_dh_M-1w07B04
B:134-194
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Asymmetric Unit 1
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Asym.Unit (233 KB)
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