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1VZX
Asym. Unit
Info
Asym.Unit (118 KB)
Biol.Unit 1 (59 KB)
Biol.Unit 2 (58 KB)
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(1)
Title
:
ROLES OF ACTIVE SITE TRYPTOPHANS IN SUBSTRATE BINDING AND CATALYSIS BY ALPHA-1,3 GALACTOSYLTRANSFERASE
Authors
:
Y. Zhang, A. Deshpande, Z. Xie, R. Natesh, K. R. Acharya, K. Brew
Date
:
28 May 04 (Deposition) - 08 Jul 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.97
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Transferase, Alpha-1, 3-Galactosyltransferase-Udp Complex, Glycosyltransferase, Glycoprotein, Transmembrane
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Zhang, A. Deshpande, Z. Xie, R. Natesh, K. R. Acharya, K. Brew
Roles Of Active Site Tryptophans In Substrate Binding And Catalysis By Alpha-1, 3 Galactosyltransferase
Glycobiology V. 14 1295 2004
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(5, 10)
Info
All Hetero Components
1a: BETA-D-GALACTOSE (GALa)
1b: BETA-D-GALACTOSE (GALb)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
3a: MANGANESE (II) ION (MNa)
3b: MANGANESE (II) ION (MNb)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
5a: URIDINE-5'-DIPHOSPHATE (UDPa)
5b: URIDINE-5'-DIPHOSPHATE (UDPb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GAL
2
Ligand/Ion
BETA-D-GALACTOSE
2
GOL
2
Ligand/Ion
GLYCEROL
3
MN
2
Ligand/Ion
MANGANESE (II) ION
4
NAG
2
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
5
UDP
2
Ligand/Ion
URIDINE-5'-DIPHOSPHATE
[
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]
Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLN A:247 , THR A:259 , TYR A:278 , TYR A:314 , GLU A:317 , TRP A:356 , LYS A:359 , NAG A:1370 , UDP A:1372 , HOH A:2318 , HOH A:2319 , HOH A:2320
BINDING SITE FOR RESIDUE GAL A1369
02
AC2
SOFTWARE
GLN A:247 , TRP A:249 , TRP A:250 , TRP A:356 , GAL A:1369 , HOH A:2282
BINDING SITE FOR RESIDUE NAG A1370
03
AC3
SOFTWARE
GLN B:1247 , THR B:1259 , TYR B:1278 , TYR B:1314 , GLU B:1317 , TRP B:1356 , LYS B:1359 , HOH B:2296 , HOH B:2298 , HOH B:2310 , HOH B:2311 , NAG B:2370 , UDP B:2372
BINDING SITE FOR RESIDUE GAL B2369
04
AC4
SOFTWARE
TRP B:1249 , TRP B:1250 , HOH B:2312 , HOH B:2313 , GAL B:2369
BINDING SITE FOR RESIDUE NAG B2370
05
AC5
SOFTWARE
ASP A:225 , ASP A:227 , UDP A:1372 , HOH A:2321
BINDING SITE FOR RESIDUE MN A1371
06
AC6
SOFTWARE
ASP B:1225 , ASP B:1227 , HOH B:2314 , UDP B:2372
BINDING SITE FOR RESIDUE MN B2371
07
AC7
SOFTWARE
PHE A:134 , ALA A:135 , VAL A:136 , TYR A:139 , ILE A:198 , SER A:199 , ARG A:202 , ASP A:225 , VAL A:226 , ASP A:227 , LYS A:359 , TYR A:361 , ARG A:365 , GAL A:1369 , MN A:1371 , HOH A:2171 , HOH A:2173 , HOH A:2318 , HOH A:2320 , HOH A:2321 , HOH A:2322 , HOH A:2323 , HOH A:2324
BINDING SITE FOR RESIDUE UDP A1372
08
AC8
SOFTWARE
PHE B:1134 , ALA B:1135 , VAL B:1136 , TYR B:1139 , ILE B:1198 , SER B:1199 , ARG B:1202 , ASP B:1225 , VAL B:1226 , ASP B:1227 , LYS B:1359 , TYR B:1361 , ARG B:1365 , HOH B:2140 , HOH B:2147 , HOH B:2296 , HOH B:2311 , HOH B:2314 , HOH B:2315 , HOH B:2316 , HOH B:2317 , GAL B:2369 , MN B:2371
BINDING SITE FOR RESIDUE UDP B2372
09
AC9
SOFTWARE
HIS A:142 , GLU A:146 , GLN A:357 , GLU A:360 , HOH A:2325
BINDING SITE FOR RESIDUE GOL A1373
10
BC1
SOFTWARE
HIS B:1142 , GLU B:1146 , GLU B:1360
BINDING SITE FOR RESIDUE GOL B2373
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
[
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Exons
(3, 6)
Info
All Exons
Exon 1.7 (A:82-92 | B:1082-1092)
Exon 1.8 (A:92-138 | B:1092-1138)
Exon 1.9 (A:138-368 | B:1138-1368)
View:
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All Exon Boundaries
1: Boundary 1.6/1.7
2: Boundary 1.7/1.8
3: Boundary 1.8/1.9
4: Boundary 1.9/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSBTAT00000016033
1
ENSBTAE00000262074
chr11:
95459665-95459416
250
GGTA1_BOVIN
-
0
0
-
-
1.2
ENSBTAT00000016033
2
ENSBTAE00000262073
chr11:
95449479-95449385
95
GGTA1_BOVIN
-
0
0
-
-
1.3
ENSBTAT00000016033
3
ENSBTAE00000262072
chr11:
95415347-95415232
116
GGTA1_BOVIN
-
0
0
-
-
1.4
ENSBTAT00000016033
4
ENSBTAE00000262071
chr11:
95404542-95404454
89
GGTA1_BOVIN
1-27
27
0
-
-
1.5
ENSBTAT00000016033
5
ENSBTAE00000262069
chr11:
95397952-95397917
36
GGTA1_BOVIN
27-39
13
0
-
-
1.6
ENSBTAT00000016033
6
ENSBTAE00000262068
chr11:
95396284-95396219
66
GGTA1_BOVIN
39-61
23
0
-
-
1.7
ENSBTAT00000016033
7
ENSBTAE00000262067
chr11:
95395659-95395567
93
GGTA1_BOVIN
61-92
32
2
A:82-92
B:1082-1092
11
11
1.8
ENSBTAT00000016033
8
ENSBTAE00000004437
chr11:
95387778-95387641
138
GGTA1_BOVIN
92-138
47
2
A:92-138
B:1092-1138
47
47
1.9
ENSBTAT00000016033
9
ENSBTAE00000130543
chr11:
95383311-95382365
947
GGTA1_BOVIN
138-368
231
2
A:138-368
B:1138-1368
231
231
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1vzxa_ (A:)
1b: SCOP_d1vzxb_ (B:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Nucleotide-diphospho-sugar transferases
(408)
Superfamily
:
Nucleotide-diphospho-sugar transferases
(408)
Family
:
alpha-1,3-galactosyltransferase-like
(125)
Protein domain
:
alpha-1,3-galactosyltransferase catalytic domain
(22)
Cow (Bos taurus) [TaxId: 9913]
(22)
1a
d1vzxa_
A:
1b
d1vzxb_
B:
[
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1vzxA00 (A:82-368)
1b: CATH_1vzxB00 (B:1082-1368)
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(
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(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A
(231)
Homologous Superfamily
:
Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A
(231)
Bovine (Bos taurus)
(20)
1a
1vzxA00
A:82-368
1b
1vzxB00
B:1082-1368
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Asymmetric Unit 1
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