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1VZT
Biol. Unit 2
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Asym.Unit (112 KB)
Biol.Unit 1 (56 KB)
Biol.Unit 2 (55 KB)
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(1)
Title
:
ROLES OF INDIVIDUAL RESIDUES OF ALPHA-1,3 GALACTOSYLTRANSFERASES IN SUBSTRATE BINDING AND CATALYSIS
Authors
:
Y. Zhang, G. J. Swaminathan, A. Deshpande, R. Natesh, X. Xie, K. R. Acharya, K. Brew
Date
:
26 May 04 (Deposition) - 26 May 05 (Release) - 15 Apr 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Transferase, Alpha-1, 3-Galactosyltransferase-Udp Complex, Glycosyltransferase, Glycoprotein, Transmembrane, Nucleotide-Binding Protein, Xenotransplantation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Zhang, G. J. Swaminathan, A. Deshpande, E. Boix, R. Natesh, Z. Xie, K. R. Acharya, K. Brew
Roles Of Individual Enzyme-Substrate Interactions By Alpha- 1, 3-Galactosyltransferase In Catalysis And Specificity.
Biochemistry V. 42 13512 2003
(for further references see the
PDB file header
)
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: MANGANESE (II) ION (MNa)
1b: MANGANESE (II) ION (MNb)
2a: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSa)
2b: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSb)
3a: URIDINE-5'-DIPHOSPHATE (UDPa)
3b: URIDINE-5'-DIPHOSPHATE (UDPb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
MN
-1
Ligand/Ion
MANGANESE (II) ION
2
TRS
1
Ligand/Ion
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
3
UDP
1
Ligand/Ion
URIDINE-5'-DIPHOSPHATE
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Sites
(3, 3)
Info
All Sites
1: AC2 (SOFTWARE)
2: AC5 (SOFTWARE)
3: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC2
SOFTWARE
ASP B:1225 , ASP B:1227 , HOH B:2221 , UDP B:2370
BINDING SITE FOR RESIDUE MN B2369
2
AC5
SOFTWARE
PHE B:1134 , ALA B:1135 , VAL B:1136 , TYR B:1139 , ILE B:1198 , SER B:1199 , ARG B:1202 , ASP B:1225 , VAL B:1226 , ASP B:1227 , LYS B:1359 , TYR B:1361 , ARG B:1365 , HOH B:2089 , HOH B:2093 , HOH B:2221 , HOH B:2222 , HOH B:2223 , HOH B:2224 , HOH B:2225 , MN B:2369 , TRS B:2371
BINDING SITE FOR RESIDUE UDP B2370
3
AC6
SOFTWARE
ALA B:1281 , TRP B:1314 , HIS B:1315 , ASP B:1316 , GLU B:1317 , HOH B:2090 , HOH B:2223 , HOH B:2225 , UDP B:2370
BINDING SITE FOR RESIDUE TRS B2371
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SAPs(SNPs)/Variants
(0, 0)
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Exons
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1vzta_ (A:)
1b: SCOP_d1vztb_ (B:)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Nucleotide-diphospho-sugar transferases
(408)
Superfamily
:
Nucleotide-diphospho-sugar transferases
(408)
Family
:
alpha-1,3-galactosyltransferase-like
(125)
Protein domain
:
alpha-1,3-galactosyltransferase catalytic domain
(22)
Cow (Bos taurus) [TaxId: 9913]
(22)
1a
d1vzta_
A:
1b
d1vztb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1vztA00 (A:82-368)
1b: CATH_1vztB00 (B:1082-1368)
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)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A
(231)
Homologous Superfamily
:
Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A
(231)
Bovine (Bos taurus)
(20)
1a
1vztA00
A:82-368
1b
1vztB00
B:1082-1368
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Glyco_transf_6_1vztB01 (B:1082-1366)
1b: PFAM_Glyco_transf_6_1vztB02 (B:1082-1366)
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(
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Clan
:
GT-A
(172)
Family
:
Glyco_transf_6
(55)
Bos taurus (Bovine)
(15)
1a
Glyco_transf_6-1vztB01
B:1082-1366
1b
Glyco_transf_6-1vztB02
B:1082-1366
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Chain B
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (112 KB)
Header - Asym.Unit
Biol.Unit 1 (56 KB)
Header - Biol.Unit 1
Biol.Unit 2 (55 KB)
Header - Biol.Unit 2
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