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1VRS
Asym. Unit
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Asym.Unit (127 KB)
Biol.Unit 1 (44 KB)
Biol.Unit 2 (44 KB)
Biol.Unit 3 (41 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE DISULFIDE-LINKED COMPLEX BETWEEN THE N-TERMINAL AND C-TERMINAL DOMAIN OF THE ELECTRON TRANSFER CATALYST DSBD
Authors
:
A. Rozhkova, C. U. Stirnimann, P. Frei, U. Grauschopf, R. Brunisholz, M. G. Gruetter, G. Capitani, R. Glockshuber
Date
:
17 Jun 05 (Deposition) - 12 Jul 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.85
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,D (1x)
Biol. Unit 2: B,E (1x)
Biol. Unit 3: C,F (1x)
Keywords
:
Dsbd, Immunoglobulin-Like, Thioredoxin-Like, Disulfide-Linked, Oxidoreductase
(Keyword Search:
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Reference
:
A. Rozhkova, C. U. Stirnimann, P. Frei, U. Grauschopf, R. Brunisholz, M. G. Gruetter, G. Capitani, R. Glockshuber
Structural Basis And Kinetics Of Inter- And Intramolecular Disulfide Exchange In The Redox Catalyst Dsbd
Embo J. V. 23 1709 2004
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Hetero Components
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Sites
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PROSITE Patterns/Profiles
(1, 3)
Info
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1: THIOREDOXIN_1 (D:453-471,E:453-471,F:453-471)
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
THIOREDOXIN_1
PS00194
Thioredoxin family active site.
DSBD_ECOLI
472-490
3
D:453-471
E:453-471
F:453-471
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d1vrsa_ (A:)
1b: SCOP_d1vrsb_ (B:)
1c: SCOP_d1vrsc_ (C:)
2a: SCOP_d1vrsd_ (D:)
2b: SCOP_d1vrse_ (E:)
2c: SCOP_d1vrsf_ (F:)
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Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha)
(8)
Family
:
Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha)
(7)
Protein domain
:
Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha)
(6)
Escherichia coli [TaxId: 562]
(5)
1a
d1vrsa_
A:
1b
d1vrsb_
B:
1c
d1vrsc_
C:
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thioredoxin fold
(994)
Superfamily
:
Thioredoxin-like
(992)
Family
:
Thioltransferase
(167)
Protein domain
:
Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
(6)
Escherichia coli [TaxId: 316407]
(1)
2a
d1vrsd_
D:
2b
d1vrse_
E:
2c
d1vrsf_
F:
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CATH Domains
(2, 6)
Info
all CATH domains
1a: CATH_1vrsD00 (D:428-545)
1b: CATH_1vrsE00 (E:426-543)
1c: CATH_1vrsF00 (F:428-545)
2a: CATH_1vrsA00 (A:1-125)
2b: CATH_1vrsB00 (B:1-125)
2c: CATH_1vrsC00 (C:9-121)
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Glutaredoxin
(620)
Homologous Superfamily
:
Glutaredoxin
(617)
K12 substr (Escherichia coli str)
(1)
1a
1vrsD00
D:428-545
1b
1vrsE00
E:426-543
1c
1vrsF00
F:428-545
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
[code=2.60.40.1250, no name defined]
(5)
K12 substr (Escherichia coli str)
(1)
2a
1vrsA00
A:1-125
2b
1vrsB00
B:1-125
2c
1vrsC00
C:9-121
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Pfam Domains
(2, 6)
Info
all PFAM domains
1a: PFAM_Thioredoxin_7_1vrsF01 (F:435-518)
1b: PFAM_Thioredoxin_7_1vrsF02 (F:435-518)
1c: PFAM_Thioredoxin_7_1vrsF03 (F:435-518)
2a: PFAM_DsbC_1vrsC01 (C:9-121)
2b: PFAM_DsbC_1vrsC02 (C:9-121)
2c: PFAM_DsbC_1vrsC03 (C:9-121)
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Clan
:
Thioredoxin
(367)
Family
:
Thioredoxin_7
(4)
Escherichia coli (strain K12)
(1)
1a
Thioredoxin_7-1vrsF01
F:435-518
1b
Thioredoxin_7-1vrsF02
F:435-518
1c
Thioredoxin_7-1vrsF03
F:435-518
Clan
:
no clan defined [family: DsbC]
(6)
Family
:
DsbC
(6)
Escherichia coli (strain K12)
(5)
2a
DsbC-1vrsC01
C:9-121
2b
DsbC-1vrsC02
C:9-121
2c
DsbC-1vrsC03
C:9-121
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Asym.Unit (127 KB)
Header - Asym.Unit
Biol.Unit 1 (44 KB)
Header - Biol.Unit 1
Biol.Unit 2 (44 KB)
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Biol.Unit 3 (41 KB)
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