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1VRG
Asym. Unit
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Asym.Unit (518 KB)
Biol.Unit 1 (502 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PROPIONYL-COA CARBOXYLASE, BETA SUBUNIT (TM0716) FROM THERMOTOGA MARITIMA AT 2.30 A RESOLUTION
Authors
:
Joint Center For Structural Genomics (Jcsg)
Date
:
22 Feb 05 (Deposition) - 08 Mar 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Tm0716, Propionyl-Coa Carboxylase, Beta Subunit, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi, Ligase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Propionyl-Coa Carboxylase, Beta Subuni (Tm0716) From Thermotoga Maritima At 2. 30 A Resolution
To Be Published
[
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Hetero Components
(3, 91)
Info
All Hetero Components
1a: BICARBONATE ION (BCTa)
1b: BICARBONATE ION (BCTb)
1c: BICARBONATE ION (BCTc)
1d: BICARBONATE ION (BCTd)
1e: BICARBONATE ION (BCTe)
1f: BICARBONATE ION (BCTf)
1g: BICARBONATE ION (BCTg)
1h: BICARBONATE ION (BCTh)
1i: BICARBONATE ION (BCTi)
1j: BICARBONATE ION (BCTj)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
3a: SELENOMETHIONINE (MSEa)
3aa: SELENOMETHIONINE (MSEaa)
3ab: SELENOMETHIONINE (MSEab)
3ac: SELENOMETHIONINE (MSEac)
3ad: SELENOMETHIONINE (MSEad)
3ae: SELENOMETHIONINE (MSEae)
3af: SELENOMETHIONINE (MSEaf)
3ag: SELENOMETHIONINE (MSEag)
3ah: SELENOMETHIONINE (MSEah)
3ai: SELENOMETHIONINE (MSEai)
3aj: SELENOMETHIONINE (MSEaj)
3ak: SELENOMETHIONINE (MSEak)
3al: SELENOMETHIONINE (MSEal)
3am: SELENOMETHIONINE (MSEam)
3an: SELENOMETHIONINE (MSEan)
3ao: SELENOMETHIONINE (MSEao)
3ap: SELENOMETHIONINE (MSEap)
3aq: SELENOMETHIONINE (MSEaq)
3ar: SELENOMETHIONINE (MSEar)
3as: SELENOMETHIONINE (MSEas)
3at: SELENOMETHIONINE (MSEat)
3au: SELENOMETHIONINE (MSEau)
3av: SELENOMETHIONINE (MSEav)
3aw: SELENOMETHIONINE (MSEaw)
3ax: SELENOMETHIONINE (MSEax)
3ay: SELENOMETHIONINE (MSEay)
3az: SELENOMETHIONINE (MSEaz)
3b: SELENOMETHIONINE (MSEb)
3ba: SELENOMETHIONINE (MSEba)
3bb: SELENOMETHIONINE (MSEbb)
3bc: SELENOMETHIONINE (MSEbc)
3bd: SELENOMETHIONINE (MSEbd)
3be: SELENOMETHIONINE (MSEbe)
3bf: SELENOMETHIONINE (MSEbf)
3bg: SELENOMETHIONINE (MSEbg)
3bh: SELENOMETHIONINE (MSEbh)
3bi: SELENOMETHIONINE (MSEbi)
3bj: SELENOMETHIONINE (MSEbj)
3bk: SELENOMETHIONINE (MSEbk)
3bl: SELENOMETHIONINE (MSEbl)
3bm: SELENOMETHIONINE (MSEbm)
3bn: SELENOMETHIONINE (MSEbn)
3bo: SELENOMETHIONINE (MSEbo)
3bp: SELENOMETHIONINE (MSEbp)
3bq: SELENOMETHIONINE (MSEbq)
3br: SELENOMETHIONINE (MSEbr)
3bs: SELENOMETHIONINE (MSEbs)
3bt: SELENOMETHIONINE (MSEbt)
3bu: SELENOMETHIONINE (MSEbu)
3bv: SELENOMETHIONINE (MSEbv)
3bw: SELENOMETHIONINE (MSEbw)
3bx: SELENOMETHIONINE (MSEbx)
3by: SELENOMETHIONINE (MSEby)
3bz: SELENOMETHIONINE (MSEbz)
3c: SELENOMETHIONINE (MSEc)
3d: SELENOMETHIONINE (MSEd)
3e: SELENOMETHIONINE (MSEe)
3f: SELENOMETHIONINE (MSEf)
3g: SELENOMETHIONINE (MSEg)
3h: SELENOMETHIONINE (MSEh)
3i: SELENOMETHIONINE (MSEi)
3j: SELENOMETHIONINE (MSEj)
3k: SELENOMETHIONINE (MSEk)
3l: SELENOMETHIONINE (MSEl)
3m: SELENOMETHIONINE (MSEm)
3n: SELENOMETHIONINE (MSEn)
3o: SELENOMETHIONINE (MSEo)
3p: SELENOMETHIONINE (MSEp)
3q: SELENOMETHIONINE (MSEq)
3r: SELENOMETHIONINE (MSEr)
3s: SELENOMETHIONINE (MSEs)
3t: SELENOMETHIONINE (MSEt)
3u: SELENOMETHIONINE (MSEu)
3v: SELENOMETHIONINE (MSEv)
3w: SELENOMETHIONINE (MSEw)
3x: SELENOMETHIONINE (MSEx)
3y: SELENOMETHIONINE (MSEy)
3z: SELENOMETHIONINE (MSEz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BCT
10
Ligand/Ion
BICARBONATE ION
2
MG
3
Ligand/Ion
MAGNESIUM ION
3
MSE
78
Mod. Amino Acid
SELENOMETHIONINE
[
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]
Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS C:379 , HOH C:598 , HOH C:699 , HIS F:379 , HOH F:656 , HOH F:679
BINDING SITE FOR RESIDUE MG C 516
02
AC2
SOFTWARE
HIS B:379 , HOH B:620 , HOH B:652 , HOH B:749 , HIS E:379 , HOH E:774
BINDING SITE FOR RESIDUE MG B 516
03
AC3
SOFTWARE
HIS A:379 , HIS D:379 , HOH D:665 , HOH D:712 , HOH D:739 , HOH D:744
BINDING SITE FOR RESIDUE MG A 516
04
AC4
SOFTWARE
GLY E:196 , PRO E:197 , ASN E:198 , VAL E:199 , HOH E:709
BINDING SITE FOR RESIDUE BCT E 516
05
AC5
SOFTWARE
GLY A:196 , PRO A:197 , ASN A:198 , VAL A:199
BINDING SITE FOR RESIDUE BCT A 517
06
AC6
SOFTWARE
GLY B:196 , PRO B:197 , ASN B:198 , VAL B:199
BINDING SITE FOR RESIDUE BCT B 517
07
AC7
SOFTWARE
GLY C:196 , PRO C:197 , ASN C:198 , VAL C:199
BINDING SITE FOR RESIDUE BCT C 517
08
AC8
SOFTWARE
GLY D:196 , PRO D:197 , ASN D:198 , VAL D:199
BINDING SITE FOR RESIDUE BCT D 516
09
AC9
SOFTWARE
GLY F:196 , PRO F:197 , ASN F:198 , VAL F:199
BINDING SITE FOR RESIDUE BCT F 516
10
BC1
SOFTWARE
PRO B:275 , ASP B:276 , ASN B:277 , LYS B:280
BINDING SITE FOR RESIDUE BCT B 518
11
BC2
SOFTWARE
PRO C:275 , ASP C:276 , ASN C:277
BINDING SITE FOR RESIDUE BCT C 518
12
BC3
SOFTWARE
LEU D:118 , LYS D:119 , GLY D:121
BINDING SITE FOR RESIDUE BCT D 517
13
BC4
SOFTWARE
PRO E:275 , ASP E:276 , ASN E:277 , LYS E:280
BINDING SITE FOR RESIDUE BCT E 517
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 12)
Info
All SCOP Domains
1a: SCOP_d1vrga1 (A:1-251)
1b: SCOP_d1vrga2 (A:252-515)
1c: SCOP_d1vrgf1 (F:1-251)
1d: SCOP_d1vrgf2 (F:252-515)
1e: SCOP_d1vrgb1 (B:1-251)
1f: SCOP_d1vrgb2 (B:252-515)
1g: SCOP_d1vrgc1 (C:1-251)
1h: SCOP_d1vrgc2 (C:252-515)
1i: SCOP_d1vrgd1 (D:1-251)
1j: SCOP_d1vrgd2 (D:252-515)
1k: SCOP_d1vrge1 (E:1-251)
1l: SCOP_d1vrge2 (E:252-515)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
ClpP/crotonase
(207)
Superfamily
:
ClpP/crotonase
(207)
Family
:
Biotin dependent carboxylase carboxyltransferase domain
(32)
Protein domain
:
Propionyl-CoA carboxylase complex B subunit, PccB
(6)
Thermotoga maritima [TaxId: 2336]
(1)
1a
d1vrga1
A:1-251
1b
d1vrga2
A:252-515
1c
d1vrgf1
F:1-251
1d
d1vrgf2
F:252-515
1e
d1vrgb1
B:1-251
1f
d1vrgb2
B:252-515
1g
d1vrgc1
C:1-251
1h
d1vrgc2
C:252-515
1i
d1vrgd1
D:1-251
1j
d1vrgd2
D:252-515
1k
d1vrge1
E:1-251
1l
d1vrge2
E:252-515
[
close SCOP info
]
CATH Domains
(1, 12)
Info
all CATH domains
1a: CATH_1vrgA02 (A:259-515)
1b: CATH_1vrgB02 (B:259-515)
1c: CATH_1vrgE01 (E:2-258)
1d: CATH_1vrgF01 (F:2-258)
1e: CATH_1vrgC02 (C:259-515)
1f: CATH_1vrgD02 (D:259-515)
1g: CATH_1vrgE02 (E:259-515)
1h: CATH_1vrgF02 (F:259-515)
1i: CATH_1vrgA01 (A:2-258)
1j: CATH_1vrgB01 (B:2-258)
1k: CATH_1vrgC01 (C:2-258)
1l: CATH_1vrgD01 (D:2-258)
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Topologies
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)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
2-enoyl-CoA Hydratase; Chain A, domain 1
(89)
Homologous Superfamily
:
2-enoyl-CoA Hydratase; Chain A, domain 1
(89)
Thermotoga maritima msb8. Organism_taxid: 243274. Strain: msb8.
(1)
1a
1vrgA02
A:259-515
1b
1vrgB02
B:259-515
1c
1vrgE01
E:2-258
1d
1vrgF01
F:2-258
1e
1vrgC02
C:259-515
1f
1vrgD02
D:259-515
1g
1vrgE02
E:259-515
1h
1vrgF02
F:259-515
1i
1vrgA01
A:2-258
1j
1vrgB01
B:2-258
1k
1vrgC01
C:2-258
1l
1vrgD01
D:2-258
[
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]
Pfam Domains
(1, 6)
Info
all PFAM domains
1a: PFAM_Carboxyl_trans_1vrgF01 (F:28-513)
1b: PFAM_Carboxyl_trans_1vrgF02 (F:28-513)
1c: PFAM_Carboxyl_trans_1vrgF03 (F:28-513)
1d: PFAM_Carboxyl_trans_1vrgF04 (F:28-513)
1e: PFAM_Carboxyl_trans_1vrgF05 (F:28-513)
1f: PFAM_Carboxyl_trans_1vrgF06 (F:28-513)
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Clans
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(
)
Organisms
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)
(
)
Clan
:
ClpP_crotonase
(88)
Family
:
Carboxyl_trans
(13)
Thermotoga maritima
(1)
1a
Carboxyl_trans-1vrgF01
F:28-513
1b
Carboxyl_trans-1vrgF02
F:28-513
1c
Carboxyl_trans-1vrgF03
F:28-513
1d
Carboxyl_trans-1vrgF04
F:28-513
1e
Carboxyl_trans-1vrgF05
F:28-513
1f
Carboxyl_trans-1vrgF06
F:28-513
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