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Asym.Unit (653 KB)
Biol.Unit 1 (329 KB)
Biol.Unit 2 (317 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF TRANSALDOLASE (EC 2.2.1.2) (TM0295) FROM THERMOTOGA MARITIMA AT 2.40 A RESOLUTION
Authors
:
Joint Center For Structural Genomics (Jcsg)
Date
:
23 Nov 04 (Deposition) - 07 Dec 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J (1x)
Biol. Unit 2: K,L,M,N,O,P,Q,R,S,T (1x)
Keywords
:
Tm0295, Transaldolase (Ec 2. 2. 1. 2), Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Transaldolase (Ec 2. 2. 1. 2) (Tm0295) From Thermotoga Maritima At 2. 40 A Resolution
To Be Published
[
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Hetero Components
(2, 22)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
1g: GLYCEROL (GOLg)
1h: GLYCEROL (GOLh)
1i: GLYCEROL (GOLi)
1j: GLYCEROL (GOLj)
1k: GLYCEROL (GOLk)
1l: GLYCEROL (GOLl)
1m: GLYCEROL (GOLm)
1n: GLYCEROL (GOLn)
1o: GLYCEROL (GOLo)
1p: GLYCEROL (GOLp)
1q: GLYCEROL (GOLq)
1r: GLYCEROL (GOLr)
1s: GLYCEROL (GOLs)
1t: GLYCEROL (GOLt)
1u: GLYCEROL (GOLu)
2a: SULFATE ION (SO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
21
Ligand/Ion
GLYCEROL
2
SO4
1
Ligand/Ion
SULFATE ION
[
close Hetero Component info
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Sites
(22, 22)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS O:2 , ASP O:23 , LYS O:51
BINDING SITE FOR RESIDUE SO4 O 219
02
AC2
SOFTWARE
VAL B:148 , TYR B:151 , ASN B:152 , PHE B:156 , THR B:158 , ASP B:180
BINDING SITE FOR RESIDUE GOL B 219
03
AC3
SOFTWARE
TYR C:151 , ASN C:152 , PHE C:156 , THR C:158 , ASP C:180
BINDING SITE FOR RESIDUE GOL C 219
04
AC4
SOFTWARE
TYR R:151 , PHE R:156 , GLU R:157 , THR R:158 , GLU R:159 , ASP R:180
BINDING SITE FOR RESIDUE GOL R 219
05
AC5
SOFTWARE
ASN S:152 , PHE S:156 , THR S:158 , ASP S:180
BINDING SITE FOR RESIDUE GOL S 219
06
AC6
SOFTWARE
TYR K:151 , ASN K:152 , GLY K:155 , PHE K:156 , THR K:158 , ASP K:180
BINDING SITE FOR RESIDUE GOL K 219
07
AC7
SOFTWARE
TYR N:151 , PHE N:156 , THR N:158 , ASP N:180
BINDING SITE FOR RESIDUE GOL N 219
08
AC8
SOFTWARE
TYR O:151 , GLY O:155 , PHE O:156 , THR O:158 , ASP O:180
BINDING SITE FOR RESIDUE GOL O 220
09
AC9
SOFTWARE
TYR F:151 , ASN F:152 , PHE F:156 , THR F:158 , ASP F:180
BINDING SITE FOR RESIDUE GOL F 219
10
BC1
SOFTWARE
VAL G:148 , TYR G:151 , ASN G:152 , PHE G:156 , THR G:158 , ASP G:180
BINDING SITE FOR RESIDUE GOL G 219
11
BC2
SOFTWARE
VAL H:148 , TYR H:151 , ASN H:152 , PHE H:156 , THR H:158 , ILE H:160 , ASP H:180
BINDING SITE FOR RESIDUE GOL H 219
12
BC3
SOFTWARE
TYR I:151 , ASN I:152 , PHE I:156 , THR I:158 , ASP I:180
BINDING SITE FOR RESIDUE GOL I 219
13
BC4
SOFTWARE
TYR J:151 , ASN J:152 , PHE J:156 , THR J:158 , ASP J:180
BINDING SITE FOR RESIDUE GOL J 219
14
BC5
SOFTWARE
VAL A:148 , TYR A:151 , ASN A:152 , PHE A:156 , THR A:158 , ASP A:180 , HOH A:221
BINDING SITE FOR RESIDUE GOL A 219
15
BC6
SOFTWARE
TYR D:151 , ASN D:152 , PHE D:156 , THR D:158 , ILE D:160 , ASP D:180
BINDING SITE FOR RESIDUE GOL D 219
16
BC7
SOFTWARE
TYR E:151 , PHE E:156 , THR E:158 , ASP E:180
BINDING SITE FOR RESIDUE GOL E 219
17
BC8
SOFTWARE
TYR P:151 , ASN P:152 , PHE P:156 , GLU P:157 , THR P:158 , ASP P:180
BINDING SITE FOR RESIDUE GOL P 219
18
BC9
SOFTWARE
TYR Q:151 , ASN Q:152 , PHE Q:156 , THR Q:158 , ASP Q:180
BINDING SITE FOR RESIDUE GOL Q 219
19
CC1
SOFTWARE
TYR T:151 , GLY T:155 , PHE T:156 , THR T:158 , ASP T:180
BINDING SITE FOR RESIDUE GOL T 219
20
CC2
SOFTWARE
TYR L:151 , ASN L:152 , PHE L:156 , GLU L:157 , THR L:158 , GLU L:159 , ASP L:180
BINDING SITE FOR RESIDUE GOL L 219
21
CC3
SOFTWARE
TYR M:151 , ASN M:152 , PHE M:156 , THR M:158 , ASP M:180
BINDING SITE FOR RESIDUE GOL M 219
22
CC4
SOFTWARE
ASP P:23 , VAL P:50 , LYS P:51 , GLY P:52
BINDING SITE FOR RESIDUE GOL P 220
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(2, 40)
Info
All PROSITE Patterns/Profiles
1: TRANSALDOLASE_1 (A:24-29,B:24-32,C:24-32,D:24-32,E:...)
2: TRANSALDOLASE_2 (A:80-97,B:80-97,C:80-97,D:80-97,E:...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TRANSALDOLASE_1
PS01054
Transaldolase signature 1.
TAL_THEMA
24-32
20
A:24-29
B:24-32
C:24-32
D:24-32
E:24-32
F:24-31
G:24-32
H:24-32
I:24-32
J:24-32
K:24-32
L:24-32
M:24-32
N:24-32
O:24-32
P:24-32
Q:24-28
R:24-30
S:24-32
T:24-30
2
TRANSALDOLASE_2
PS00958
Transaldolase active site.
TAL_THEMA
80-97
20
A:80-97
B:80-97
C:80-97
D:80-97
E:80-97
F:80-97
G:80-97
H:80-97
I:80-97
J:80-97
K:80-97
L:80-97
M:80-97
N:80-97
O:80-97
P:80-97
Q:80-97
R:80-97
S:80-97
T:80-97
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 20)
Info
All SCOP Domains
1a: SCOP_d1vpxa_ (A:)
1b: SCOP_d1vpxb_ (B:)
1c: SCOP_d1vpxk_ (K:)
1d: SCOP_d1vpxl_ (L:)
1e: SCOP_d1vpxm_ (M:)
1f: SCOP_d1vpxn_ (N:)
1g: SCOP_d1vpxo_ (O:)
1h: SCOP_d1vpxp_ (P:)
1i: SCOP_d1vpxq_ (Q:)
1j: SCOP_d1vpxr_ (R:)
1k: SCOP_d1vpxs_ (S:)
1l: SCOP_d1vpxt_ (T:)
1m: SCOP_d1vpxc_ (C:)
1n: SCOP_d1vpxd_ (D:)
1o: SCOP_d1vpxe_ (E:)
1p: SCOP_d1vpxf_ (F:)
1q: SCOP_d1vpxg_ (G:)
1r: SCOP_d1vpxh_ (H:)
1s: SCOP_d1vpxi_ (I:)
1t: SCOP_d1vpxj_ (J:)
View:
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Folds
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Superfamilies
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)
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)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Aldolase
(457)
Family
:
Class I aldolase
(182)
Protein domain
:
Decameric fructose-6-phosphate aldolase/transaldolase
(3)
Thermotoga maritima [TaxId: 2336]
(1)
1a
d1vpxa_
A:
1b
d1vpxb_
B:
1c
d1vpxk_
K:
1d
d1vpxl_
L:
1e
d1vpxm_
M:
1f
d1vpxn_
N:
1g
d1vpxo_
O:
1h
d1vpxp_
P:
1i
d1vpxq_
Q:
1j
d1vpxr_
R:
1k
d1vpxs_
S:
1l
d1vpxt_
T:
1m
d1vpxc_
C:
1n
d1vpxd_
D:
1o
d1vpxe_
E:
1p
d1vpxf_
F:
1q
d1vpxg_
G:
1r
d1vpxh_
H:
1s
d1vpxi_
I:
1t
d1vpxj_
J:
[
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]
CATH Domains
(1, 20)
Info
all CATH domains
1a: CATH_1vpxE00 (E:0-215)
1b: CATH_1vpxG00 (G:-1-214)
1c: CATH_1vpxK00 (K:0-215)
1d: CATH_1vpxF00 (F:-1-216)
1e: CATH_1vpxJ00 (J:-1-211)
1f: CATH_1vpxI00 (I:-1-214)
1g: CATH_1vpxD00 (D:-1-208)
1h: CATH_1vpxO00 (O:-1-208)
1i: CATH_1vpxR00 (R:0-215)
1j: CATH_1vpxB00 (B:-1-207)
1k: CATH_1vpxP00 (P:-1-207)
1l: CATH_1vpxC00 (C:0-207)
1m: CATH_1vpxQ00 (Q:-1-214)
1n: CATH_1vpxA00 (A:-1-216)
1o: CATH_1vpxH00 (H:0-208)
1p: CATH_1vpxS00 (S:0-204)
1q: CATH_1vpxL00 (L:-1-208)
1r: CATH_1vpxN00 (N:0-206)
1s: CATH_1vpxT00 (T:0-215)
1t: CATH_1vpxM00 (M:0-204)
View:
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)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Aldolase class I
(887)
Thermotoga maritima. Organism_taxid: 2336.
(13)
1a
1vpxE00
E:0-215
1b
1vpxG00
G:-1-214
1c
1vpxK00
K:0-215
1d
1vpxF00
F:-1-216
1e
1vpxJ00
J:-1-211
1f
1vpxI00
I:-1-214
1g
1vpxD00
D:-1-208
1h
1vpxO00
O:-1-208
1i
1vpxR00
R:0-215
1j
1vpxB00
B:-1-207
1k
1vpxP00
P:-1-207
1l
1vpxC00
C:0-207
1m
1vpxQ00
Q:-1-214
1n
1vpxA00
A:-1-216
1o
1vpxH00
H:0-208
1p
1vpxS00
S:0-204
1q
1vpxL00
L:-1-208
1r
1vpxN00
N:0-206
1s
1vpxT00
T:0-215
1t
1vpxM00
M:0-204
[
close CATH info
]
Pfam Domains
(1, 20)
Info
all PFAM domains
1a: PFAM_Transaldolase_1vpxT01 (T:3-215)
1b: PFAM_Transaldolase_1vpxT02 (T:3-215)
1c: PFAM_Transaldolase_1vpxT03 (T:3-215)
1d: PFAM_Transaldolase_1vpxT04 (T:3-215)
1e: PFAM_Transaldolase_1vpxT05 (T:3-215)
1f: PFAM_Transaldolase_1vpxT06 (T:3-215)
1g: PFAM_Transaldolase_1vpxT07 (T:3-215)
1h: PFAM_Transaldolase_1vpxT08 (T:3-215)
1i: PFAM_Transaldolase_1vpxT09 (T:3-215)
1j: PFAM_Transaldolase_1vpxT10 (T:3-215)
1k: PFAM_Transaldolase_1vpxT11 (T:3-215)
1l: PFAM_Transaldolase_1vpxT12 (T:3-215)
1m: PFAM_Transaldolase_1vpxT13 (T:3-215)
1n: PFAM_Transaldolase_1vpxT14 (T:3-215)
1o: PFAM_Transaldolase_1vpxT15 (T:3-215)
1p: PFAM_Transaldolase_1vpxT16 (T:3-215)
1q: PFAM_Transaldolase_1vpxT17 (T:3-215)
1r: PFAM_Transaldolase_1vpxT18 (T:3-215)
1s: PFAM_Transaldolase_1vpxT19 (T:3-215)
1t: PFAM_Transaldolase_1vpxT20 (T:3-215)
View:
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Clans
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Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
TIM_barrel
(694)
Family
:
Transaldolase
(6)
Thermotoga maritima
(1)
1a
Transaldolase-1vpxT01
T:3-215
1b
Transaldolase-1vpxT02
T:3-215
1c
Transaldolase-1vpxT03
T:3-215
1d
Transaldolase-1vpxT04
T:3-215
1e
Transaldolase-1vpxT05
T:3-215
1f
Transaldolase-1vpxT06
T:3-215
1g
Transaldolase-1vpxT07
T:3-215
1h
Transaldolase-1vpxT08
T:3-215
1i
Transaldolase-1vpxT09
T:3-215
1j
Transaldolase-1vpxT10
T:3-215
1k
Transaldolase-1vpxT11
T:3-215
1l
Transaldolase-1vpxT12
T:3-215
1m
Transaldolase-1vpxT13
T:3-215
1n
Transaldolase-1vpxT14
T:3-215
1o
Transaldolase-1vpxT15
T:3-215
1p
Transaldolase-1vpxT16
T:3-215
1q
Transaldolase-1vpxT17
T:3-215
1r
Transaldolase-1vpxT18
T:3-215
1s
Transaldolase-1vpxT19
T:3-215
1t
Transaldolase-1vpxT20
T:3-215
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