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1VP4
Asym. Unit
Info
Asym.Unit (153 KB)
Biol.Unit 1 (145 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A PUTATIVE AMINOTRANSFERASE (TM1131) FROM THERMOTOGA MARITIMA MSB8 AT 1.82 A RESOLUTION
Authors
:
Joint Center For Structural Genomics (Jcsg)
Date
:
08 Oct 04 (Deposition) - 26 Oct 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.82
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Aminotransferase, Putative (Tm1131) From Thermotoga Maritima At 1. 82 A Resolution
To Be Published
[
close entry info
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Hetero Components
(5, 53)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
2a: FORMIC ACID (FMTa)
2aa: FORMIC ACID (FMTaa)
2b: FORMIC ACID (FMTb)
2c: FORMIC ACID (FMTc)
2d: FORMIC ACID (FMTd)
2e: FORMIC ACID (FMTe)
2f: FORMIC ACID (FMTf)
2g: FORMIC ACID (FMTg)
2h: FORMIC ACID (FMTh)
2i: FORMIC ACID (FMTi)
2j: FORMIC ACID (FMTj)
2k: FORMIC ACID (FMTk)
2l: FORMIC ACID (FMTl)
2m: FORMIC ACID (FMTm)
2n: FORMIC ACID (FMTn)
2o: FORMIC ACID (FMTo)
2p: FORMIC ACID (FMTp)
2q: FORMIC ACID (FMTq)
2r: FORMIC ACID (FMTr)
2s: FORMIC ACID (FMTs)
2t: FORMIC ACID (FMTt)
2u: FORMIC ACID (FMTu)
2v: FORMIC ACID (FMTv)
2w: FORMIC ACID (FMTw)
2x: FORMIC ACID (FMTx)
2y: FORMIC ACID (FMTy)
2z: FORMIC ACID (FMTz)
3a: SELENOMETHIONINE (MSEa)
3b: SELENOMETHIONINE (MSEb)
3c: SELENOMETHIONINE (MSEc)
3d: SELENOMETHIONINE (MSEd)
3e: SELENOMETHIONINE (MSEe)
3f: SELENOMETHIONINE (MSEf)
3g: SELENOMETHIONINE (MSEg)
3h: SELENOMETHIONINE (MSEh)
3i: SELENOMETHIONINE (MSEi)
3j: SELENOMETHIONINE (MSEj)
3k: SELENOMETHIONINE (MSEk)
3l: SELENOMETHIONINE (MSEl)
3m: SELENOMETHIONINE (MSEm)
3n: SELENOMETHIONINE (MSEn)
3o: SELENOMETHIONINE (MSEo)
3p: SELENOMETHIONINE (MSEp)
4a: PYRIDOXAL-5'-PHOSPHATE (PLPa)
4b: PYRIDOXAL-5'-PHOSPHATE (PLPb)
5a: UNKNOWN LIGAND (UNLa)
5b: UNKNOWN LIGAND (UNLb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
6
Ligand/Ion
1,2-ETHANEDIOL
2
FMT
27
Ligand/Ion
FORMIC ACID
3
MSE
16
Mod. Amino Acid
SELENOMETHIONINE
4
PLP
2
Ligand/Ion
PYRIDOXAL-5'-PHOSPHATE
5
UNL
2
Ligand/Ion
UNKNOWN LIGAND
[
close Hetero Component info
]
Sites
(37, 37)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:105 , SER A:106 , GLN A:107 , TYR A:131 , VAL A:182 , ASN A:187 , ASP A:215 , PRO A:217 , TYR A:218 , THR A:245 , SER A:247 , LYS A:248 , ARG A:255 , HOH A:641 , TYR B:69
BINDING SITE FOR RESIDUE PLP A 501
02
AC2
SOFTWARE
GLY A:39 , ASN A:187 , ARG A:381 , EDO A:604 , HOH A:667 , TYR B:69
BINDING SITE FOR RESIDUE UNL A 601
03
AC3
SOFTWARE
TYR A:69 , GLY B:105 , SER B:106 , GLN B:107 , TYR B:131 , VAL B:182 , ASN B:187 , ASP B:215 , PRO B:217 , TYR B:218 , THR B:245 , SER B:247 , LYS B:248 , ARG B:255 , HOH B:673
BINDING SITE FOR RESIDUE PLP B 501
04
AC4
SOFTWARE
GLY B:38 , GLY B:39 , TYR B:131 , ASN B:187 , ARG B:381 , HOH B:743
BINDING SITE FOR RESIDUE UNL B 601
05
AC5
SOFTWARE
ASP B:216 , PRO B:217 , GLY B:219 , ALA B:220 , ASN B:244 , THR B:245
BINDING SITE FOR RESIDUE EDO B 602
06
AC6
SOFTWARE
ARG A:290 , GLU A:293 , ARG A:294 , HOH A:699
BINDING SITE FOR RESIDUE EDO A 602
07
AC7
SOFTWARE
THR A:93 , GLY A:94 , LEU A:95 , HOH A:646
BINDING SITE FOR RESIDUE EDO A 603
08
AC8
SOFTWARE
FMT A:617 , ASP B:119 , ASP B:120 , TYR B:141 , LEU B:142 , HOH B:672
BINDING SITE FOR RESIDUE EDO B 603
09
AC9
SOFTWARE
ILE A:21 , LEU A:25 , GLY A:37 , GLY A:38 , GLY A:39 , UNL A:601 , HOH A:667
BINDING SITE FOR RESIDUE EDO A 604
10
BC1
SOFTWARE
THR B:93 , GLY B:94 , LEU B:95 , HOH B:651
BINDING SITE FOR RESIDUE EDO B 604
11
BC2
SOFTWARE
LYS A:330 , TRP A:331
BINDING SITE FOR RESIDUE FMT A 605
12
BC3
SOFTWARE
ASP A:216 , PRO A:217 , GLY A:219 , ALA A:220 , ASN A:244 , THR A:245
BINDING SITE FOR RESIDUE FMT A 606
13
BC4
SOFTWARE
ALA A:28 , SER A:35 , GLY A:38 , LEU A:386 , HOH A:685
BINDING SITE FOR RESIDUE FMT A 607
14
BC5
SOFTWARE
THR B:45 , VAL B:249 , THR B:304 , FMT B:608
BINDING SITE FOR RESIDUE FMT B 605
15
BC6
SOFTWARE
ASP A:152 , VAL A:191 , THR A:192 , HOH A:640
BINDING SITE FOR RESIDUE FMT A 608
16
BC7
SOFTWARE
ILE A:92 , THR A:93 , HOH A:719
BINDING SITE FOR RESIDUE FMT A 609
17
BC8
SOFTWARE
THR A:45 , VAL A:249 , THR A:304 , HOH A:665 , HOH A:677
BINDING SITE FOR RESIDUE FMT A 610
18
BC9
SOFTWARE
PRO B:237 , GLU B:238 , VAL B:240 , VAL B:241 , GLY B:261 , SER B:262 , PHE B:265
BINDING SITE FOR RESIDUE FMT B 606
19
CC1
SOFTWARE
ARG A:400 , FMT A:618 , LYS B:49 , GLU B:53 , TYR B:295
BINDING SITE FOR RESIDUE FMT A 611
20
CC2
SOFTWARE
ASP B:152 , VAL B:191 , THR B:192
BINDING SITE FOR RESIDUE FMT B 607
21
CC3
SOFTWARE
THR B:45 , PHE B:46 , LYS B:248 , LEU B:250 , TYR B:308 , FMT B:605
BINDING SITE FOR RESIDUE FMT B 608
22
CC4
SOFTWARE
ASP B:127 , MSE B:155 , VAL B:181 , VAL B:182 , THR B:193
BINDING SITE FOR RESIDUE FMT B 609
23
CC5
SOFTWARE
ASP A:128 , LYS A:371 , VAL A:372 , TYR A:373 , GLU A:375
BINDING SITE FOR RESIDUE FMT A 612
24
CC6
SOFTWARE
ASP A:127 , VAL A:181 , VAL A:182 , HIS A:186 , THR A:193
BINDING SITE FOR RESIDUE FMT A 613
25
CC7
SOFTWARE
GLY A:94 , ASP A:96 , HIS A:411
BINDING SITE FOR RESIDUE FMT A 614
26
CC8
SOFTWARE
LEU A:292 , GLU A:293 , TYR A:295
BINDING SITE FOR RESIDUE FMT A 615
27
CC9
SOFTWARE
LEU A:150 , GLU A:151 , ASP A:152 , HOH A:701
BINDING SITE FOR RESIDUE FMT A 616
28
DC1
SOFTWARE
ASP A:120 , TYR A:141 , LEU A:142 , HOH A:672 , EDO B:603
BINDING SITE FOR RESIDUE FMT A 617
29
DC2
SOFTWARE
GLU A:401 , FMT A:611 , GLU B:53
BINDING SITE FOR RESIDUE FMT A 618
30
DC3
SOFTWARE
PHE A:348
BINDING SITE FOR RESIDUE FMT A 619
31
DC4
SOFTWARE
LYS A:56 , ASP A:325 , ARG A:400 , HOH A:676 , GLU B:53
BINDING SITE FOR RESIDUE FMT A 620
32
DC5
SOFTWARE
THR B:71 , GLU B:73 , GLY B:74 , LYS B:79
BINDING SITE FOR RESIDUE FMT B 610
33
DC6
SOFTWARE
GLN B:80 , ASP B:96 , GLU B:97 , HIS B:411 , HOH B:677
BINDING SITE FOR RESIDUE FMT B 611
34
DC7
SOFTWARE
SER B:70 , THR B:72
BINDING SITE FOR RESIDUE FMT B 612
35
DC8
SOFTWARE
SER A:18 , HOH A:809 , VAL B:270 , GLN B:274
BINDING SITE FOR RESIDUE FMT A 621
36
DC9
SOFTWARE
PRO A:237 , VAL A:240 , VAL A:241 , GLY A:261 , SER A:262
BINDING SITE FOR RESIDUE FMT A 622
37
EC1
SOFTWARE
LEU B:25 , SER B:35 , LEU B:386
BINDING SITE FOR RESIDUE FMT B 613
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1vp4a_ (A:)
1b: SCOP_d1vp4b_ (B:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
PLP-dependent transferase-like
(627)
Superfamily
:
PLP-dependent transferases
(625)
Family
:
AAT-like
(184)
Protein domain
:
Putative aminotransferase TM1131
(1)
Thermotoga maritima [TaxId: 2336]
(1)
1a
d1vp4a_
A:
1b
d1vp4b_
B:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Aminotran_1_2_1vp4B01 (B:31-399)
1b: PFAM_Aminotran_1_2_1vp4B02 (B:31-399)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
PLP_aminotran
(240)
Family
:
Aminotran_1_2
(77)
Thermotoga maritima
(4)
1a
Aminotran_1_2-1vp4B01
B:31-399
1b
Aminotran_1_2-1vp4B02
B:31-399
[
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]
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Asym.Unit (153 KB)
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