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1VLN
Asym. Unit
Info
Asym.Unit (300 KB)
Biol.Unit 1 (148 KB)
Biol.Unit 2 (150 KB)
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(1)
Title
:
A TRICLINIC CRYSTAL FORM OF THE LECTIN CONCANAVALIN A
Authors
:
P. N. Kanellopoulos, P. A. Tucker, S. J. Hamodrakas
Date
:
03 Apr 96 (Deposition) - 01 Apr 97 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Keywords
:
Legume, Lectin, Calcium, Manganese
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. N. Kanellopoulos, P. A. Tucker, K. Pavlou, B. Agianian, S. J. Hamodrakas
A Triclinic Crystal Form Of The Lectin Concanavalin A
J. Struct. Biol. V. 117 16 1996
(for further references see the
PDB file header
)
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Hetero Components
(2, 16)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
2a: MANGANESE (II) ION (MNa)
2b: MANGANESE (II) ION (MNb)
2c: MANGANESE (II) ION (MNc)
2d: MANGANESE (II) ION (MNd)
2e: MANGANESE (II) ION (MNe)
2f: MANGANESE (II) ION (MNf)
2g: MANGANESE (II) ION (MNg)
2h: MANGANESE (II) ION (MNh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
8
Ligand/Ion
CALCIUM ION
2
MN
8
Ligand/Ion
MANGANESE (II) ION
[
close Hetero Component info
]
Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:8 , ASP A:10 , ASP A:19 , HIS A:24 , HOH A:240 , HOH A:241
BINDING SITE FOR RESIDUE MN A 238
02
AC2
SOFTWARE
ASP A:10 , TYR A:12 , ASN A:14 , ASP A:19 , HOH A:242 , HOH A:243
BINDING SITE FOR RESIDUE CA A 239
03
AC3
SOFTWARE
GLU B:8 , ASP B:10 , ASP B:19 , HIS B:24 , HOH B:240 , HOH B:241
BINDING SITE FOR RESIDUE MN B 238
04
AC4
SOFTWARE
ASP B:10 , TYR B:12 , ASN B:14 , ASP B:19 , HOH B:242 , HOH B:243
BINDING SITE FOR RESIDUE CA B 239
05
AC5
SOFTWARE
GLU C:8 , ASP C:10 , ASP C:19 , HIS C:24 , HOH C:240
BINDING SITE FOR RESIDUE MN C 238
06
AC6
SOFTWARE
ASP C:10 , TYR C:12 , ASN C:14 , ASP C:19 , HOH C:242 , HOH C:243
BINDING SITE FOR RESIDUE CA C 239
07
AC7
SOFTWARE
GLU D:8 , ASP D:10 , ASP D:19 , HIS D:24 , HOH D:240 , HOH D:241
BINDING SITE FOR RESIDUE MN D 238
08
AC8
SOFTWARE
ASP D:10 , TYR D:12 , ASN D:14 , ASP D:19 , HOH D:242 , HOH D:243
BINDING SITE FOR RESIDUE CA D 239
09
AC9
SOFTWARE
GLU E:8 , ASP E:10 , ASP E:19 , HIS E:24 , HOH E:240 , HOH E:241
BINDING SITE FOR RESIDUE MN E 238
10
BC1
SOFTWARE
ASP E:10 , TYR E:12 , ASN E:14 , ASP E:19 , HOH E:242 , HOH E:243
BINDING SITE FOR RESIDUE CA E 239
11
BC2
SOFTWARE
GLU F:8 , ASP F:10 , ASP F:19 , HIS F:24 , HOH F:240 , HOH F:241
BINDING SITE FOR RESIDUE MN F 238
12
BC3
SOFTWARE
ASP F:10 , TYR F:12 , ASN F:14 , ASP F:19 , HOH F:242 , HOH F:243
BINDING SITE FOR RESIDUE CA F 239
13
BC4
SOFTWARE
GLU G:8 , ASP G:10 , ASP G:19 , HIS G:24 , HOH G:240 , HOH G:241
BINDING SITE FOR RESIDUE MN G 238
14
BC5
SOFTWARE
ASP G:10 , TYR G:12 , ASN G:14 , ASP G:19 , HOH G:242 , HOH G:243
BINDING SITE FOR RESIDUE CA G 239
15
BC6
SOFTWARE
GLU H:8 , ASP H:10 , ASP H:19 , HIS H:24 , HOH H:240 , HOH H:241
BINDING SITE FOR RESIDUE MN H 238
16
BC7
SOFTWARE
ASP H:10 , TYR H:12 , ASN H:14 , ASP H:19 , HOH H:242 , HOH H:243
BINDING SITE FOR RESIDUE CA H 239
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 16)
Info
All PROSITE Patterns/Profiles
1: LECTIN_LEGUME_BETA (A:5-10,B:5-10,C:5-10,D:5-10,E:5-10...)
2: LECTIN_LEGUME_ALPHA (A:85-94,B:85-94,C:85-94,D:85-94,E:...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LECTIN_LEGUME_BETA
PS00307
Legume lectins beta-chain signature.
LECA_DIOGR
5-11
8
A:5-10
B:5-10
C:5-10
D:5-10
E:5-10
F:5-10
G:5-10
H:5-10
2
LECTIN_LEGUME_ALPHA
PS00308
Legume lectins alpha-chain signature.
LECA_DIOGR
85-94
8
A:85-94
B:85-94
C:85-94
D:85-94
E:85-94
F:85-94
G:85-94
H:85-94
[
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Exons
(0, 0)
Info
All Exons
View:
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d1vlna_ (A:)
1b: SCOP_d1vlnb_ (B:)
1c: SCOP_d1vlnc_ (C:)
1d: SCOP_d1vlnd_ (D:)
1e: SCOP_d1vlne_ (E:)
1f: SCOP_d1vlnf_ (F:)
1g: SCOP_d1vlng_ (G:)
1h: SCOP_d1vlnh_ (H:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Concanavalin A-like lectins/glucanases
(797)
Superfamily
:
Concanavalin A-like lectins/glucanases
(797)
Family
:
Legume lectins
(238)
Protein domain
:
Concanavalin A
(59)
Jack bean (Canavalia ensiformis) [TaxId: 3823]
(52)
1a
d1vlna_
A:
1b
d1vlnb_
B:
1c
d1vlnc_
C:
1d
d1vlnd_
D:
1e
d1vlne_
E:
1f
d1vlnf_
F:
1g
d1vlng_
G:
1h
d1vlnh_
H:
[
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_1vlnA00 (A:1-237)
1b: CATH_1vlnB00 (B:1-237)
1c: CATH_1vlnC00 (C:1-237)
1d: CATH_1vlnD00 (D:1-237)
1e: CATH_1vlnE00 (E:1-237)
1f: CATH_1vlnF00 (F:1-237)
1g: CATH_1vlnG00 (G:1-237)
1h: CATH_1vlnH00 (H:1-237)
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)
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Architectures
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)
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)
Topologies
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)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
[code=2.60.120.200, no name defined]
(421)
Jack bean (Canavalia ensiformis)
(50)
1a
1vlnA00
A:1-237
1b
1vlnB00
B:1-237
1c
1vlnC00
C:1-237
1d
1vlnD00
D:1-237
1e
1vlnE00
E:1-237
1f
1vlnF00
F:1-237
1g
1vlnG00
G:1-237
1h
1vlnH00
H:1-237
[
close CATH info
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Pfam Domains
(1, 16)
Info
all PFAM domains
1a: PFAM_Lectin_legB_1vlnH01 (H:124-237)
1b: PFAM_Lectin_legB_1vlnH02 (H:124-237)
1c: PFAM_Lectin_legB_1vlnH03 (H:124-237)
1d: PFAM_Lectin_legB_1vlnH04 (H:124-237)
1e: PFAM_Lectin_legB_1vlnH05 (H:124-237)
1f: PFAM_Lectin_legB_1vlnH06 (H:124-237)
1g: PFAM_Lectin_legB_1vlnH07 (H:124-237)
1h: PFAM_Lectin_legB_1vlnH08 (H:124-237)
1i: PFAM_Lectin_legB_1vlnH09 (H:124-237)
1j: PFAM_Lectin_legB_1vlnH10 (H:124-237)
1k: PFAM_Lectin_legB_1vlnH11 (H:124-237)
1l: PFAM_Lectin_legB_1vlnH12 (H:124-237)
1m: PFAM_Lectin_legB_1vlnH13 (H:124-237)
1n: PFAM_Lectin_legB_1vlnH14 (H:124-237)
1o: PFAM_Lectin_legB_1vlnH15 (H:124-237)
1p: PFAM_Lectin_legB_1vlnH16 (H:124-237)
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Clans
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Families
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(
)
Organisms
(
)
(
)
Clan
:
Concanavalin
(293)
Family
:
Lectin_legB
(93)
Dioclea grandiflora (Mucana)
(3)
1a
Lectin_legB-1vlnH01
H:124-237
1b
Lectin_legB-1vlnH02
H:124-237
1c
Lectin_legB-1vlnH03
H:124-237
1d
Lectin_legB-1vlnH04
H:124-237
1e
Lectin_legB-1vlnH05
H:124-237
1f
Lectin_legB-1vlnH06
H:124-237
1g
Lectin_legB-1vlnH07
H:124-237
1h
Lectin_legB-1vlnH08
H:124-237
1i
Lectin_legB-1vlnH09
H:124-237
1j
Lectin_legB-1vlnH10
H:124-237
1k
Lectin_legB-1vlnH11
H:124-237
1l
Lectin_legB-1vlnH12
H:124-237
1m
Lectin_legB-1vlnH13
H:124-237
1n
Lectin_legB-1vlnH14
H:124-237
1o
Lectin_legB-1vlnH15
H:124-237
1p
Lectin_legB-1vlnH16
H:124-237
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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