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1VL6
Asym. Unit
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Asym.Unit (236 KB)
Biol.Unit 1 (224 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF NAD-DEPENDENT MALIC ENZYME (TM0542) FROM THERMOTOGA MARITIMA AT 2.61 A RESOLUTION
Authors
:
Joint Center For Structural Genomics (Jcsg)
Date
:
13 Jul 04 (Deposition) - 17 Aug 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.61
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Tm0542, Nad-Dependent Malic Enzyme, Structural Genomics, Jcsg, Protein Structure Initiative, Psi, Joint Center For Structural Genomics, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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Reference
:
Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542) From Thermotoga Maritima At 2. 61 A Resolution
To Be Published
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Hetero Components
(1, 23)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1b: SELENOMETHIONINE (MSEb)
1c: SELENOMETHIONINE (MSEc)
1d: SELENOMETHIONINE (MSEd)
1e: SELENOMETHIONINE (MSEe)
1f: SELENOMETHIONINE (MSEf)
1g: SELENOMETHIONINE (MSEg)
1h: SELENOMETHIONINE (MSEh)
1i: SELENOMETHIONINE (MSEi)
1j: SELENOMETHIONINE (MSEj)
1k: SELENOMETHIONINE (MSEk)
1l: SELENOMETHIONINE (MSEl)
1m: SELENOMETHIONINE (MSEm)
1n: SELENOMETHIONINE (MSEn)
1o: SELENOMETHIONINE (MSEo)
1p: SELENOMETHIONINE (MSEp)
1q: SELENOMETHIONINE (MSEq)
1r: SELENOMETHIONINE (MSEr)
1s: SELENOMETHIONINE (MSEs)
1t: SELENOMETHIONINE (MSEt)
1u: SELENOMETHIONINE (MSEu)
1v: SELENOMETHIONINE (MSEv)
1w: SELENOMETHIONINE (MSEw)
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No.
Name
Count
Type
Full Name
1
MSE
23
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(0, 0)
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SAPs(SNPs)/Variants
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d1vl6a2 (A:1-154)
1b: SCOP_d1vl6b2 (B:1-154)
1c: SCOP_d1vl6c2 (C:1-154)
1d: SCOP_d1vl6d2 (D:1-154)
2a: SCOP_d1vl6a1 (A:155-376)
2b: SCOP_d1vl6b1 (B:155-376)
2c: SCOP_d1vl6c1 (C:155-376)
2d: SCOP_d1vl6d1 (D:155-376)
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Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Aminoacid dehydrogenase-like, N-terminal domain
(100)
Superfamily
:
Aminoacid dehydrogenase-like, N-terminal domain
(100)
Family
:
Malic enzyme N-domain
(14)
Protein domain
:
Malate oxidoreductase (malic enzyme)
(1)
Thermotoga maritima [TaxId: 2336]
(1)
1a
d1vl6a2
A:1-154
1b
d1vl6b2
B:1-154
1c
d1vl6c2
C:1-154
1d
d1vl6d2
D:1-154
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Aminoacid dehydrogenase-like, C-terminal domain
(67)
Protein domain
:
Malate oxidoreductase (malic enzyme)
(1)
Thermotoga maritima [TaxId: 2336]
(1)
2a
d1vl6a1
A:155-376
2b
d1vl6b1
B:155-376
2c
d1vl6c1
C:155-376
2d
d1vl6d1
D:155-376
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_1vl6A01 (A:0-153)
1b: CATH_1vl6B01 (B:0-153)
1c: CATH_1vl6C01 (C:0-153)
1d: CATH_1vl6D01 (D:0-153)
2a: CATH_1vl6B02 (B:154-376)
2b: CATH_1vl6A02 (A:154-376)
2c: CATH_1vl6C02 (C:154-376)
2d: CATH_1vl6D02 (D:154-376)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Aminoacid dehydrogenase-like, N-terminal domain. Chain A
(17)
Thermotoga maritima msb8. Organism_taxid: 243274. Strain: msb8.
(1)
1a
1vl6A01
A:0-153
1b
1vl6B01
B:0-153
1c
1vl6C01
C:0-153
1d
1vl6D01
D:0-153
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Thermotoga maritima msb8. Organism_taxid: 243274. Strain: msb8.
(2)
2a
1vl6B02
B:154-376
2b
1vl6A02
A:154-376
2c
1vl6C02
C:154-376
2d
1vl6D02
D:154-376
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Pfam Domains
(2, 12)
Info
all PFAM domains
1a: PFAM_Malic_M_1vl6D01 (D:156-376)
1b: PFAM_Malic_M_1vl6D02 (D:156-376)
1c: PFAM_Malic_M_1vl6D03 (D:156-376)
1d: PFAM_Malic_M_1vl6D04 (D:156-376)
2a: PFAM_malic_1vl6D05 (D:105-144)
2b: PFAM_malic_1vl6D06 (D:105-144)
2c: PFAM_malic_1vl6D07 (D:105-144)
2d: PFAM_malic_1vl6D08 (D:105-144)
2e: PFAM_malic_1vl6D09 (D:105-144)
2f: PFAM_malic_1vl6D10 (D:105-144)
2g: PFAM_malic_1vl6D11 (D:105-144)
2h: PFAM_malic_1vl6D12 (D:105-144)
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Clan
:
NADP_Rossmann
(1239)
Family
:
Malic_M
(9)
Thermotoga maritima
(1)
1a
Malic_M-1vl6D01
D:156-376
1b
Malic_M-1vl6D02
D:156-376
1c
Malic_M-1vl6D03
D:156-376
1d
Malic_M-1vl6D04
D:156-376
Clan
:
no clan defined [family: malic]
(9)
Family
:
malic
(9)
Thermotoga maritima
(1)
2a
malic-1vl6D05
D:105-144
2b
malic-1vl6D06
D:105-144
2c
malic-1vl6D07
D:105-144
2d
malic-1vl6D08
D:105-144
2e
malic-1vl6D09
D:105-144
2f
malic-1vl6D10
D:105-144
2g
malic-1vl6D11
D:105-144
2h
malic-1vl6D12
D:105-144
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