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1VKZ
Biol. Unit 1
Info
Asym.Unit (133 KB)
Biol.Unit 1 (64 KB)
Biol.Unit 2 (65 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PHOSPHORIBOSYLAMINE--GLYCINE LIGASE (TM1250) FROM THERMOTOGA MARITIMA AT 2.30 A RESOLUTION
Authors
:
Joint Center For Structural Genomics (Jcsg)
Date
:
29 Jun 04 (Deposition) - 24 Aug 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Tm1250, Phosphoribosylamine--Glycine Ligase, Structural Genomics, Jcsg, Protein Structure Initiative, Psi, Joint Center For Structural Genomics, Ligase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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Reference
:
Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Phosphoribosylamine--Glycine Ligase (Tm1250) From Thermotoga Maritima At 2. 30 A Resolution
To Be Published
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Hetero Components
(1, 7)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
2a: SELENOMETHIONINE (MSEa)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
2j: SELENOMETHIONINE (MSEj)
2k: SELENOMETHIONINE (MSEk)
2l: SELENOMETHIONINE (MSEl)
2m: SELENOMETHIONINE (MSEm)
2n: SELENOMETHIONINE (MSEn)
View:
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Label:
No.
Name
Count
Type
Full Name
1
EDO
-1
Ligand/Ion
1,2-ETHANEDIOL
2
MSE
7
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(0, 0)
Info
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Sorry, no Info available
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: GARS (A:277-284)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GARS
PS00184
Phosphoribosylglycinamide synthetase signature.
PUR2_THEMA
277-284
1
A:277-284
-
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d1vkza1 (A:314-399)
1b: SCOP_d1vkzb1 (B:314-399)
2a: SCOP_d1vkza3 (A:94-313)
2b: SCOP_d1vkzb3 (B:94-313)
3a: SCOP_d1vkza2 (A:4-93)
3b: SCOP_d1vkzb2 (B:4-93)
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Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Barrel-sandwich hybrid
(185)
Superfamily
:
Rudiment single hybrid motif
(69)
Family
:
BC C-terminal domain-like
(40)
Protein domain
:
Glycinamide ribonucleotide synthetase (GAR-syn), C-domain
(2)
Thermotoga maritima [TaxId: 2336]
(1)
1a
d1vkza1
A:314-399
1b
d1vkzb1
B:314-399
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
ATP-grasp
(191)
Superfamily
:
Glutathione synthetase ATP-binding domain-like
(158)
Family
:
BC ATP-binding domain-like
(53)
Protein domain
:
Glycinamide ribonucleotide synthetase (GAR-syn), domain 2
(2)
Thermotoga maritima [TaxId: 2336]
(1)
2a
d1vkza3
A:94-313
2b
d1vkzb3
B:94-313
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
PreATP-grasp domain
(131)
Superfamily
:
PreATP-grasp domain
(131)
Family
:
BC N-terminal domain-like
(50)
Protein domain
:
Glycinamide ribonucleotide synthetase (GAR-syn), N-domain
(2)
Thermotoga maritima [TaxId: 2336]
(1)
3a
d1vkza2
A:4-93
3b
d1vkzb2
B:4-93
[
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CATH Domains
(4, 8)
Info
all CATH domains
1a: CATH_1vkzA03 (A:181-314)
1b: CATH_1vkzB03 (B:181-314)
2a: CATH_1vkzA02 (A:111-180)
2b: CATH_1vkzB02 (B:111-180)
3a: CATH_1vkzA01 (A:4-85)
3b: CATH_1vkzB01 (B:4-85)
4a: CATH_1vkzA04 (A:315-399)
4b: CATH_1vkzB04 (B:315-399)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
D-amino Acid Aminotransferase; Chain A, domain 1
(175)
Homologous Superfamily
:
ATP-grasp fold, B domain
(118)
Thermotoga maritima. Organism_taxid: 2336.
(2)
1a
1vkzA03
A:181-314
1b
1vkzB03
B:181-314
Topology
:
Dna Ligase; domain 1
(375)
Homologous Superfamily
:
ATP-grasp fold, A domain
(109)
Thermotoga maritima. Organism_taxid: 2336.
(1)
2a
1vkzA02
A:111-180
2b
1vkzB02
B:111-180
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.20, no name defined]
(85)
Thermotoga maritima. Organism_taxid: 2336.
(1)
3a
1vkzA01
A:4-85
3b
1vkzB01
B:4-85
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Glycinamide Ribonucleotide Synthetase; Chain A, domain 4
(10)
Homologous Superfamily
:
Glycinamide Ribonucleotide Synthetase; Chain A, domain 4
(10)
Thermotoga maritima. Organism_taxid: 2336.
(1)
4a
1vkzA04
A:315-399
4b
1vkzB04
B:315-399
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Pfam Domains
(3, 6)
Info
all PFAM domains
1a: PFAM_GARS_A_1vkzB01 (B:93-283)
1b: PFAM_GARS_A_1vkzB02 (B:93-283)
2a: PFAM_GARS_C_1vkzB03 (B:315-399)
2b: PFAM_GARS_C_1vkzB04 (B:315-399)
3a: PFAM_GARS_N_1vkzB05 (B:4-92)
3b: PFAM_GARS_N_1vkzB06 (B:4-92)
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Clans
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)
Organisms
(
)
(
)
Clan
:
ATP-grasp
(83)
Family
:
GARS_A
(12)
Thermotoga maritima
(1)
1a
GARS_A-1vkzB01
B:93-283
1b
GARS_A-1vkzB02
B:93-283
Clan
:
no clan defined [family: GARS_C]
(12)
Family
:
GARS_C
(12)
Thermotoga maritima
(1)
2a
GARS_C-1vkzB03
B:315-399
2b
GARS_C-1vkzB04
B:315-399
Clan
:
no clan defined [family: GARS_N]
(12)
Family
:
GARS_N
(12)
Thermotoga maritima
(1)
3a
GARS_N-1vkzB05
B:4-92
3b
GARS_N-1vkzB06
B:4-92
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Asym.Unit (133 KB)
Header - Asym.Unit
Biol.Unit 1 (64 KB)
Header - Biol.Unit 1
Biol.Unit 2 (65 KB)
Header - Biol.Unit 2
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