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1VKZ
Asym. Unit
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Asym.Unit (133 KB)
Biol.Unit 1 (64 KB)
Biol.Unit 2 (65 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PHOSPHORIBOSYLAMINE--GLYCINE LIGASE (TM1250) FROM THERMOTOGA MARITIMA AT 2.30 A RESOLUTION
Authors
:
Joint Center For Structural Genomics (Jcsg)
Date
:
29 Jun 04 (Deposition) - 24 Aug 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Tm1250, Phosphoribosylamine--Glycine Ligase, Structural Genomics, Jcsg, Protein Structure Initiative, Psi, Joint Center For Structural Genomics, Ligase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Phosphoribosylamine--Glycine Ligase (Tm1250) From Thermotoga Maritima At 2. 30 A Resolution
To Be Published
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Hetero Components
(2, 15)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
2a: SELENOMETHIONINE (MSEa)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
2j: SELENOMETHIONINE (MSEj)
2k: SELENOMETHIONINE (MSEk)
2l: SELENOMETHIONINE (MSEl)
2m: SELENOMETHIONINE (MSEm)
2n: SELENOMETHIONINE (MSEn)
View:
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Label:
No.
Name
Count
Type
Full Name
1
EDO
1
Ligand/Ion
1,2-ETHANEDIOL
2
MSE
14
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LEU B:180
BINDING SITE FOR RESIDUE EDO B 401
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: GARS (A:277-284,B:277-284)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GARS
PS00184
Phosphoribosylglycinamide synthetase signature.
PUR2_THEMA
277-284
2
A:277-284
B:277-284
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d1vkza1 (A:314-399)
1b: SCOP_d1vkzb1 (B:314-399)
2a: SCOP_d1vkza3 (A:94-313)
2b: SCOP_d1vkzb3 (B:94-313)
3a: SCOP_d1vkza2 (A:4-93)
3b: SCOP_d1vkzb2 (B:4-93)
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)
Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Barrel-sandwich hybrid
(185)
Superfamily
:
Rudiment single hybrid motif
(69)
Family
:
BC C-terminal domain-like
(40)
Protein domain
:
Glycinamide ribonucleotide synthetase (GAR-syn), C-domain
(2)
Thermotoga maritima [TaxId: 2336]
(1)
1a
d1vkza1
A:314-399
1b
d1vkzb1
B:314-399
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
ATP-grasp
(191)
Superfamily
:
Glutathione synthetase ATP-binding domain-like
(158)
Family
:
BC ATP-binding domain-like
(53)
Protein domain
:
Glycinamide ribonucleotide synthetase (GAR-syn), domain 2
(2)
Thermotoga maritima [TaxId: 2336]
(1)
2a
d1vkza3
A:94-313
2b
d1vkzb3
B:94-313
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
PreATP-grasp domain
(131)
Superfamily
:
PreATP-grasp domain
(131)
Family
:
BC N-terminal domain-like
(50)
Protein domain
:
Glycinamide ribonucleotide synthetase (GAR-syn), N-domain
(2)
Thermotoga maritima [TaxId: 2336]
(1)
3a
d1vkza2
A:4-93
3b
d1vkzb2
B:4-93
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CATH Domains
(4, 8)
Info
all CATH domains
1a: CATH_1vkzA03 (A:181-314)
1b: CATH_1vkzB03 (B:181-314)
2a: CATH_1vkzA02 (A:111-180)
2b: CATH_1vkzB02 (B:111-180)
3a: CATH_1vkzA01 (A:4-85)
3b: CATH_1vkzB01 (B:4-85)
4a: CATH_1vkzA04 (A:315-399)
4b: CATH_1vkzB04 (B:315-399)
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)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
D-amino Acid Aminotransferase; Chain A, domain 1
(175)
Homologous Superfamily
:
ATP-grasp fold, B domain
(118)
Thermotoga maritima. Organism_taxid: 2336.
(2)
1a
1vkzA03
A:181-314
1b
1vkzB03
B:181-314
Topology
:
Dna Ligase; domain 1
(375)
Homologous Superfamily
:
ATP-grasp fold, A domain
(109)
Thermotoga maritima. Organism_taxid: 2336.
(1)
2a
1vkzA02
A:111-180
2b
1vkzB02
B:111-180
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.20, no name defined]
(85)
Thermotoga maritima. Organism_taxid: 2336.
(1)
3a
1vkzA01
A:4-85
3b
1vkzB01
B:4-85
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Glycinamide Ribonucleotide Synthetase; Chain A, domain 4
(10)
Homologous Superfamily
:
Glycinamide Ribonucleotide Synthetase; Chain A, domain 4
(10)
Thermotoga maritima. Organism_taxid: 2336.
(1)
4a
1vkzA04
A:315-399
4b
1vkzB04
B:315-399
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Pfam Domains
(3, 6)
Info
all PFAM domains
1a: PFAM_GARS_A_1vkzB01 (B:93-283)
1b: PFAM_GARS_A_1vkzB02 (B:93-283)
2a: PFAM_GARS_C_1vkzB03 (B:315-399)
2b: PFAM_GARS_C_1vkzB04 (B:315-399)
3a: PFAM_GARS_N_1vkzB05 (B:4-92)
3b: PFAM_GARS_N_1vkzB06 (B:4-92)
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Clans
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Families
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(
)
Organisms
(
)
(
)
Clan
:
ATP-grasp
(83)
Family
:
GARS_A
(12)
Thermotoga maritima
(1)
1a
GARS_A-1vkzB01
B:93-283
1b
GARS_A-1vkzB02
B:93-283
Clan
:
no clan defined [family: GARS_C]
(12)
Family
:
GARS_C
(12)
Thermotoga maritima
(1)
2a
GARS_C-1vkzB03
B:315-399
2b
GARS_C-1vkzB04
B:315-399
Clan
:
no clan defined [family: GARS_N]
(12)
Family
:
GARS_N
(12)
Thermotoga maritima
(1)
3a
GARS_N-1vkzB05
B:4-92
3b
GARS_N-1vkzB06
B:4-92
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Asym.Unit (133 KB)
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