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1VKH
Asym. Unit
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Asym.Unit (102 KB)
Biol.Unit 1 (95 KB)
Biol.Unit 2 (96 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A PUTATIVE SERINE HYDROLASE (YDR428C) FROM SACCHAROMYCES CEREVISIAE AT 1.85 A RESOLUTION
Authors
:
Joint Center For Structural Genomics (Jcsg)
Date
:
20 May 04 (Deposition) - 08 Jun 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.85
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A,B (1x)
Keywords
:
Putative Serine Hydrolase, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. W. Arndt, R. Schwarzenbacher, R. Page, P. Abdubek, E. Ambing, T. Biorac, J. M. Canaves, H. J. Chiu, X. Dai, A. M. Deacon, M. Didonato, M. A. Elsliger, A. Godzik, C. Grittini, S. K. Grzechnik, J. Hale, E. Hampton, G. W. Han, J. Haugen, M. Hornsby, H. E. Klock, E. Koesema, A. Kreusch, P. Kuhn, L. Jaroszewski, S. A. Lesley, I. Levin, D. Mcmullan, T. M. Mcphillips, M. D. Miller, A. Morse, K. Moy, E. Nigoghossian, J. Ouyang, W. S. Peti, K. Quijano, R. Reyes, E. Sims, G. Spraggon, R. C. Stevens, H. Van Den Bedem, J. Velasquez, J. Vincent, F. Von Delft, X. Wang, B. West, A. White, G. Wolf, Q. Xu, O. Zagnitko, K. O. Hodgson, J. Wooley, I. A. Wilson
Crystal Structure Of An Alpha/Beta Serine Hydrolase (Ydr428C) From Saccharomyces Cerevisiae At 1. 85 A Resolutio
Proteins V. 58 755 2005
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Hetero Components
(3, 18)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
3a: SELENOMETHIONINE (MSEa)
3b: SELENOMETHIONINE (MSEb)
3c: SELENOMETHIONINE (MSEc)
3d: SELENOMETHIONINE (MSEd)
3e: SELENOMETHIONINE (MSEe)
3f: SELENOMETHIONINE (MSEf)
3g: SELENOMETHIONINE (MSEg)
3h: SELENOMETHIONINE (MSEh)
3i: SELENOMETHIONINE (MSEi)
3j: SELENOMETHIONINE (MSEj)
3k: SELENOMETHIONINE (MSEk)
3l: SELENOMETHIONINE (MSEl)
3m: SELENOMETHIONINE (MSEm)
3n: SELENOMETHIONINE (MSEn)
3o: SELENOMETHIONINE (MSEo)
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No.
Name
Count
Type
Full Name
1
CL
1
Ligand/Ion
CHLORIDE ION
2
GOL
2
Ligand/Ion
GLYCEROL
3
MSE
15
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(3, 3)
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All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:131 , GLU A:132 , ALA A:133 , SER B:131 , GLU B:132 , ALA B:133 , HOH B:547
BINDING SITE FOR RESIDUE CL B 455
2
AC2
SOFTWARE
THR A:28 , ARG A:29 , GLU A:30 , GLY A:100 , THR A:102 , ASN A:103
BINDING SITE FOR RESIDUE GOL A 456
3
AC3
SOFTWARE
ASP A:228 , HOH A:673
BINDING SITE FOR RESIDUE GOL A 457
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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Exons
(1, 2)
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Exon 1.1 (A:-1-261 | B:10-261)
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1: Boundary -/1.1
2: Boundary 1.1/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
YDR428C
1
YDR428C.1
IV:1324232-1323447
786
KFA_YEAST
1-261
261
2
A:-1-261
B:10-261
261
252
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SCOP Domains
(1, 2)
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All SCOP Domains
1a: SCOP_d1vkha_ (A:)
1b: SCOP_d1vkhb_ (B:)
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Protein Domains
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Organisms
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
alpha/beta-Hydrolases
(971)
Superfamily
:
alpha/beta-Hydrolases
(971)
Family
:
Putative serine hydrolase Ydr428c
(1)
Protein domain
:
Putative serine hydrolase Ydr428c
(1)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(1)
1a
d1vkha_
A:
1b
d1vkhb_
B:
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CATH Domains
(0, 0)
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Pfam Domains
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Asym.Unit (102 KB)
Header - Asym.Unit
Biol.Unit 1 (95 KB)
Header - Biol.Unit 1
Biol.Unit 2 (96 KB)
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