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1VIT
Biol. Unit 1
Info
Asym.Unit (101 KB)
Biol.Unit 1 (49 KB)
Biol.Unit 2 (49 KB)
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(1)
Title
:
THROMBIN:HIRUDIN 51-65 COMPLEX
Authors
:
J. Vitali, B. F. P. Edwards
Date
:
31 Jan 96 (Deposition) - 21 Apr 97 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.20
Chains
:
Asym. Unit : F,G,H,I,J,L,M
Biol. Unit 1: H,I,L (1x)
Biol. Unit 2: F,G,J,M (1x)
Keywords
:
Complex (Serine Protease-Inhibitor), Hydrolase, Serine Protease, Blood Coagulation, Complex (Serine Protease-Inhibitor) Complex
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
J. Vitali, P. D. Martin, M. G. Malkowski, C. M. Olsen, P. H. Johnson, B. F. Edwards
Structure Of A Bovine Thrombin-Hirudin51-65 Complex Determined By A Combination Of Molecular Replacement And Graphics. Incorporation Of Known Structural Information In Molecular Replacement.
Acta Crystallogr. , Sect. D V. 52 453 1996
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: N-ACETYL-D-GLUCOSAMINE (NAGa)
1b: N-ACETYL-D-GLUCOSAMINE (NAGb)
1c: N-ACETYL-D-GLUCOSAMINE (NAGc)
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Label:
No.
Name
Count
Type
Full Name
1
NAG
2
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN H:60G , PHE H:60H , THR H:60I , NAG H:402
BINDING SITE FOR RESIDUE NAG H 401
2
AC2
SOFTWARE
NAG H:401
BINDING SITE FOR RESIDUE NAG H 402
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_THRB_BOVIN_001 (D222N, chain H, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_THRB_BOVIN_001
*
D
600
N
THRB_BOVIN
---
---
H
D
222
N
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: TRYPSIN_DOM (H:16-243)
2: TRYPSIN_HIS (H:53-58)
3: TRYPSIN_SER (H:189-200)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TRYPSIN_DOM
PS50240
Serine proteases, trypsin domain profile.
THRB_BOVIN
367-621
1
-
H:16-243
2
TRYPSIN_HIS
PS00134
Serine proteases, trypsin family, histidine active site.
THRB_BOVIN
405-410
1
-
H:53-58
3
TRYPSIN_SER
PS00135
Serine proteases, trypsin family, serine active site.
THRB_BOVIN
565-576
1
-
H:189-200
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1vit_1 (L:,H:)
1b: SCOP_d1vit_2 (M:,F:,G:)
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Protein Domains
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(
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Organisms
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)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Trypsin-like serine proteases
(1752)
Superfamily
:
Trypsin-like serine proteases
(1752)
Family
:
Eukaryotic proteases
(1343)
Protein domain
:
Thrombin
(188)
Cow (Bos taurus) [TaxId: 9913]
(19)
1a
d1vit.1
L:,H:
1b
d1vit.2
M:,F:,G:
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CATH Domains
(2, 6)
Info
all CATH domains
1a: CATH_1vitL00 (L:1H-15)
1b: CATH_1vitM00 (M:1H-15)
2a: CATH_1vitH02 (H:28-120,H:233-247)
2b: CATH_1vitH01 (H:16-27,H:121-232)
2c: CATH_1vitG00 (G:149B-247)
2d: CATH_1vitF00 (F:16-149A)
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)
Organisms
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)
(
)
Class
:
Few Secondary Structures
(1120)
Architecture
:
Irregular
(1120)
Topology
:
Epsilon-Thrombin; Chain L
(37)
Homologous Superfamily
:
Epsilon-Thrombin, subunit L
(37)
Cattle (Bos taurus)
(17)
1a
1vitL00
L:1H-15
1b
1vitM00
M:1H-15
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Thrombin, subunit H
(1535)
Homologous Superfamily
:
Trypsin-like serine proteases
(1488)
Cattle (Bos taurus)
(308)
2a
1vitH02
H:28-120,H:233-247
2b
1vitH01
H:16-27,H:121-232
2c
1vitG00
G:149B-247
2d
1vitF00
F:16-149A
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Pfam Domains
(2, 5)
Info
all PFAM domains
1a: PFAM_Trypsin_1vitH01 (H:16-238)
1b: PFAM_Trypsin_1vitH02 (H:16-238)
1c: PFAM_Trypsin_1vitH03 (H:16-238)
2a: PFAM_Thrombin_light_1vitM01 (M:1H-15)
2b: PFAM_Thrombin_light_1vitM02 (M:1H-15)
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Clan
:
Peptidase_PA
(797)
Family
:
Trypsin
(679)
Bos taurus (Bovine)
(190)
1a
Trypsin-1vitH01
H:16-238
1b
Trypsin-1vitH02
H:16-238
1c
Trypsin-1vitH03
H:16-238
Clan
:
no clan defined [family: Thrombin_light]
(136)
Family
:
Thrombin_light
(136)
Bos taurus (Bovine)
(10)
2a
Thrombin_light-1vitM01
M:1H-15
2b
Thrombin_light-1vitM02
M:1H-15
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (101 KB)
Header - Asym.Unit
Biol.Unit 1 (49 KB)
Header - Biol.Unit 1
Biol.Unit 2 (49 KB)
Header - Biol.Unit 2
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