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1VIM
Asym. Unit
Info
Asym.Unit (138 KB)
Biol.Unit 1 (134 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF AN HYPOTHETICAL PROTEIN
Authors
:
Structural Genomix
Date
:
01 Dec 03 (Deposition) - 30 Dec 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.36
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Structural Genomics, Unknown Function
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Badger, J. M. Sauder, J. M. Adams, S. Antonysamy, K. Bain, M. G. Bergseid, S. G. Buchanan, M. D. Buchanan, Y. Batiyenko, J. A. Christopher, S. Emtage, A. Eroshkina, I. Feil, E. B. Furlong, K. S. Gajiwala, X. Gao, D. He, J. Hendle, A. Huber, K. Hoda, P. Kearins, C. Kissinger, B. Laubert, H. A. Lewis, J. Lin, K. Loomis, D. Lorimer, G. Louie, M. Maletic, C. D. Marsh, I. Miller, J. Molinari, H. J. Muller-Dieckmann, J. M. Newman, B. W. Noland, B. Pagarigan, F. Park, T. S. Peat, K. W. Post, S. Radojicic, A. Ramos, R. Romero, M. E. Rutter, W. E. Sanderson, K. D. Schwinn, J. Tresser, J. Winhoven, T. A. Wright, L. Wu, J. Xu, T. J. Harris
Structural Analysis Of A Set Of Proteins Resulting From A Bacterial Genomics Project
Proteins V. 60 787 2005
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Hetero Components
(1, 5)
Info
All Hetero Components
1a: FORMIC ACID (FMTa)
1b: FORMIC ACID (FMTb)
1c: FORMIC ACID (FMTc)
1d: FORMIC ACID (FMTd)
1e: FORMIC ACID (FMTe)
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No.
Name
Count
Type
Full Name
1
FMT
5
Ligand/Ion
FORMIC ACID
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PRO A:72 , ARG A:73 , ILE A:74 , ALA C:180 , VAL C:181 , LEU C:182 , HOH C:194
BINDING SITE FOR RESIDUE FMT C 188
2
AC2
SOFTWARE
ALA A:180 , VAL A:181 , LEU A:182 , HOH A:191 , PRO C:72 , ARG C:73 , ILE C:74
BINDING SITE FOR RESIDUE FMT A 188
3
AC3
SOFTWARE
PRO B:72 , ARG B:73 , ILE B:74 , ALA D:180 , VAL D:181 , LEU D:182 , HOH D:199
BINDING SITE FOR RESIDUE FMT D 188
4
AC4
SOFTWARE
ALA B:180 , VAL B:181 , LEU B:182 , HOH B:201 , PRO D:72 , ARG D:73 , ILE D:74
BINDING SITE FOR RESIDUE FMT B 188
5
AC5
SOFTWARE
ARG B:35 , LYS D:128 , LYS D:130 , MET D:131 , LYS D:132
BINDING SITE FOR RESIDUE FMT D 189
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: SIS (A:27-170,B:27-170,C:27-170,D:27-17...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SIS
PS51464
SIS domain profile.
Y1796_ARCFU
27-170
4
A:27-170
B:27-170
C:27-170
D:27-170
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1vima_ (A:)
1b: SCOP_d1vimb_ (B:)
1c: SCOP_d1vimc_ (C:)
1d: SCOP_d1vimd_ (D:)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
SIS domain
(85)
Superfamily
:
SIS domain
(85)
Family
:
mono-SIS domain
(10)
Protein domain
:
Hypothetical protein AF1796
(1)
Archaeoglobus fulgidus [TaxId: 2234]
(1)
1a
d1vima_
A:
1b
d1vimb_
B:
1c
d1vimc_
C:
1d
d1vimd_
D:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1vimA00 (A:-5-186)
1b: CATH_1vimC00 (C:-4-185)
1c: CATH_1vimD00 (D:-4-185)
1d: CATH_1vimB00 (B:-2-185)
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(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Glucose-6-phosphate isomerase like protein; domain 1
(105)
Archaeoglobus fulgidus. Organism_taxid: 2234.
(1)
1a
1vimA00
A:-5-186
1b
1vimC00
C:-4-185
1c
1vimD00
D:-4-185
1d
1vimB00
B:-2-185
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_SIS_1vimD01 (D:30-161)
1b: PFAM_SIS_1vimD02 (D:30-161)
1c: PFAM_SIS_1vimD03 (D:30-161)
1d: PFAM_SIS_1vimD04 (D:30-161)
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Clan
:
SIS
(53)
Family
:
SIS
(23)
Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
(1)
1a
SIS-1vimD01
D:30-161
1b
SIS-1vimD02
D:30-161
1c
SIS-1vimD03
D:30-161
1d
SIS-1vimD04
D:30-161
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Asymmetric Unit 1
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Asym.Unit (138 KB)
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