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1VI6
Asym. Unit
Info
Asym.Unit (141 KB)
Biol.Unit 1 (70 KB)
Biol.Unit 2 (70 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF RIBOSOMAL PROTEIN S2P
Authors
:
Structural Genomix
Date
:
01 Dec 03 (Deposition) - 30 Dec 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Structural Genomics, Ribosome
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Badger, J. M. Sauder, J. M. Adams, S. Antonysamy, K. Bain, M. G. Bergseid, S. G. Buchanan, M. D. Buchanan, Y. Batiyenko, J. A. Christopher, S. Emtage, A. Eroshkina, I. Feil, E. B. Furlong, K. S. Gajiwala, X. Gao, D. He, J. Hendle, A. Huber, K. Hoda, P. Kearins, C. Kissinger, B. Laubert, H. A. Lewis, J. Lin, K. Loomis, D. Lorimer, G. Louie, M. Maletic, C. D. Marsh, I. Miller, J. Molinari, H. J. Muller-Dieckmann, J. M. Newman, B. W. Noland, B. Pagarigan, F. Park, T. S. Peat, K. W. Post, S. Radojicic, A. Ramos, R. Romero, M. E. Rutter, W. E. Sanderson, K. D. Schwinn, J. Tresser, J. Winhoven, T. A. Wright, L. Wu, J. Xu, T. J. Harris
Structural Analysis Of A Set Of Proteins Resulting From A Bacterial Genomics Project
Proteins V. 60 787 2005
(for further references see the
PDB file header
)
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Hetero Components
(1, 10)
Info
All Hetero Components
1a: SODIUM ION (NAa)
1b: SODIUM ION (NAb)
1c: SODIUM ION (NAc)
1d: SODIUM ION (NAd)
1e: SODIUM ION (NAe)
1f: SODIUM ION (NAf)
1g: SODIUM ION (NAg)
1h: SODIUM ION (NAh)
1i: SODIUM ION (NAi)
1j: SODIUM ION (NAj)
View:
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Label:
No.
Name
Count
Type
Full Name
1
NA
10
Ligand/Ion
SODIUM ION
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR D:134 , VAL D:140 , ASP D:152 , ASP D:154 , HOH D:224 , HOH D:226
BINDING SITE FOR RESIDUE NA D 208
02
AC2
SOFTWARE
THR A:134 , VAL A:140 , ASP A:152 , ASP A:154 , HOH A:232 , HOH A:261
BINDING SITE FOR RESIDUE NA A 208
03
AC3
SOFTWARE
THR B:134 , VAL B:140 , ASP B:152 , ASP B:154 , HOH B:221 , HOH B:233
BINDING SITE FOR RESIDUE NA B 208
04
AC4
SOFTWARE
ILE C:22 , GLY C:23 , ASP C:145 , ASN C:160 , HOH C:356
BINDING SITE FOR RESIDUE NA C 208
05
AC5
SOFTWARE
THR C:134 , VAL C:140 , ASP C:152 , ASP C:154 , HOH C:226 , HOH C:234
BINDING SITE FOR RESIDUE NA C 209
06
AC6
SOFTWARE
ILE A:22 , GLY A:23 , ASP A:145 , ASN A:160 , HOH A:357
BINDING SITE FOR RESIDUE NA A 209
07
AC7
SOFTWARE
ILE D:22 , GLY D:23 , ASP D:145 , ASN D:160 , HOH D:332
BINDING SITE FOR RESIDUE NA D 209
08
AC8
SOFTWARE
ILE B:22 , GLY B:23 , ASP B:145 , ASN B:160 , HOH B:336
BINDING SITE FOR RESIDUE NA B 209
09
AC9
SOFTWARE
HOH B:334 , PHE C:186 , HOH C:261 , HOH C:282 , HOH C:357
BINDING SITE FOR RESIDUE NA C 210
10
BC1
SOFTWARE
PHE A:186 , HOH A:274 , HOH A:351 , HOH A:365 , HOH A:366
BINDING SITE FOR RESIDUE NA A 210
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: RIBOSOMAL_S2_2 (A:115-139,B:115-139,C:115-139,D:11...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RIBOSOMAL_S2_2
PS00963
Ribosomal protein S2 signature 2.
RS2_ARCFU
115-139
4
A:115-139
B:115-139
C:115-139
D:115-139
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1vi6a_ (A:)
1b: SCOP_d1vi6b_ (B:)
1c: SCOP_d1vi6c_ (C:)
1d: SCOP_d1vi6d_ (D:)
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)
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)
(
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Flavodoxin-like
(1057)
Superfamily
:
Ribosomal protein S2
(74)
Family
:
Ribosomal protein S2
(74)
Protein domain
:
Ribosomal protein S2
(74)
Archaeoglobus fulgidus [TaxId: 2234]
(2)
1a
d1vi6a_
A:
1b
d1vi6b_
B:
1c
d1vi6c_
C:
1d
d1vi6d_
D:
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_Ribosomal_S2_1vi6D01 (D:107-182)
1b: PFAM_Ribosomal_S2_1vi6D02 (D:107-182)
1c: PFAM_Ribosomal_S2_1vi6D03 (D:107-182)
1d: PFAM_Ribosomal_S2_1vi6D04 (D:107-182)
1e: PFAM_Ribosomal_S2_1vi6D05 (D:107-182)
1f: PFAM_Ribosomal_S2_1vi6D06 (D:107-182)
1g: PFAM_Ribosomal_S2_1vi6D07 (D:107-182)
1h: PFAM_Ribosomal_S2_1vi6D08 (D:107-182)
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Clans
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Organisms
(
)
(
)
Clan
:
no clan defined [family: Ribosomal_S2]
(18)
Family
:
Ribosomal_S2
(18)
Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
(1)
1a
Ribosomal_S2-1vi6D01
D:107-182
1b
Ribosomal_S2-1vi6D02
D:107-182
1c
Ribosomal_S2-1vi6D03
D:107-182
1d
Ribosomal_S2-1vi6D04
D:107-182
1e
Ribosomal_S2-1vi6D05
D:107-182
1f
Ribosomal_S2-1vi6D06
D:107-182
1g
Ribosomal_S2-1vi6D07
D:107-182
1h
Ribosomal_S2-1vi6D08
D:107-182
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Show PDB file:
Asym.Unit (141 KB)
Header - Asym.Unit
Biol.Unit 1 (70 KB)
Header - Biol.Unit 1
Biol.Unit 2 (70 KB)
Header - Biol.Unit 2
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