PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
1VHR
Biol. Unit 1
Info
Asym.Unit (65 KB)
Biol.Unit 1 (32 KB)
Biol.Unit 2 (32 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
HUMAN VH1-RELATED DUAL-SPECIFICITY PHOSPHATASE
Authors
:
J. Yuvaniyama, J. M. Denu, J. E. Dixon, M. A. Saper
Date
:
20 Feb 96 (Deposition) - 20 Jun 96 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Hydrolase, Protein Dual-Specificity Phosphatase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Yuvaniyama, J. M. Denu, J. E. Dixon, M. A. Saper
Crystal Structure Of The Dual Specificity Protein Phosphatase Vhr.
Science V. 272 1328 1996
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(1, 1)
Info
All Hetero Components
1a: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEa)
2a: SULFATE ION (SO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EPE
1
Ligand/Ion
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
2
SO4
-1
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(5, 5)
Info
All Sites
1: AC2 (SOFTWARE)
2: GAA (UNKNOWN)
3: PLA (UNKNOWN)
4: RCA (UNKNOWN)
5: VRA (UNKNOWN)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC2
SOFTWARE
ASP A:92 , CYS A:124 , ARG A:125 , GLU A:126 , GLY A:127 , TYR A:128 , SER A:129 , ARG A:130
BINDING SITE FOR RESIDUE EPE A 401
2
GAA
UNKNOWN
ILE A:88 , LYS A:89 , ALA A:90 , ASN A:91 , ASP A:92 , THR A:93 , GLN A:94 , GLU A:95 , PHE A:96 , ASN A:97 , LEU A:98
THE LOOP CONTAINING THE PUTATIVE GENERAL ACID ASP 92.
3
PLA
UNKNOWN
HIS A:123 , CYS A:124 , ARG A:125 , GLU A:126 , GLY A:127 , TYR A:128 , SER A:129 , ARG A:130 , SER A:131
PHOSPHATE BINDING LOOP INCLUDING CATALYTIC NUCLEOPHILE CYS 130
4
RCA
UNKNOWN
GLY A:19 , SER A:20 , GLY A:21 , CYS A:22 , TYR A:23 , SER A:24 , LEU A:25 , PRO A:26 , SER A:27 , GLN A:28 , PRO A:29
DESIGNATED RECOGNITION REGION IN PRIMARY REFERENCE. PROPOSED TO AFFECT SUBSTRATE SPECIFICITY.
5
VRA
UNKNOWN
ALA A:62 , ALA A:63 , GLU A:64 , GLY A:65 , ARG A:66 , SER A:67 , PHE A:68 , MET A:69 , HIS A:70 , VAL A:71 , ASN A:72 , THR A:73 , ASN A:74 , ALA A:75 , ASN A:76 , PHE A:77 , TYR A:78 , LYS A:79 , ASP A:80 , SER A:81 , GLY A:82
THE REGION CONTAINING HIGH VARIATION AMONG THE DUAL-SPECIFICITY PHOSPHATASES AND THE PROTEIN TYROSINE PHOSPHATASES.
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: TYR_PHOSPHATASE_DUAL (A:32-178)
2: TYR_PHOSPHATASE_2 (A:99-158)
3: TYR_PHOSPHATASE_1 (A:122-132)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TYR_PHOSPHATASE_DUAL
PS50054
Dual specificity protein phosphatase family profile.
DUS3_HUMAN
32-178
1
A:32-178
-
2
TYR_PHOSPHATASE_2
PS50056
Tyrosine specific protein phosphatases family profile.
DUS3_HUMAN
99-158
1
A:99-158
-
3
TYR_PHOSPHATASE_1
PS00383
Tyrosine specific protein phosphatases active site.
DUS3_HUMAN
122-132
1
A:122-132
-
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1vhra_ (A:)
1b: SCOP_d1vhrb_ (B:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
(Phosphotyrosine protein) phosphatases II
(296)
Superfamily
:
(Phosphotyrosine protein) phosphatases II
(296)
Family
:
Dual specificity phosphatase-like
(27)
Protein domain
:
VH1-related dual-specificity phosphatase, VHR
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1vhra_
A:
1b
d1vhrb_
B:
[
close SCOP info
]
CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1vhrA00 (A:8-185)
1b: CATH_1vhrB00 (B:8-185)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Protein-Tyrosine Phosphatase; Chain A
(262)
Homologous Superfamily
:
Protein tyrosine phosphatase superfamily
(228)
Human (Homo sapiens)
(196)
1a
1vhrA00
A:8-185
1b
1vhrB00
B:8-185
[
close CATH info
]
Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_DSPc_1vhrB01 (B:37-176)
1b: PFAM_DSPc_1vhrB02 (B:37-176)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Phosphatase
(121)
Family
:
DSPc
(22)
Homo sapiens (Human)
(13)
1a
DSPc-1vhrB01
B:37-176
1b
DSPc-1vhrB02
B:37-176
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (65 KB)
Header - Asym.Unit
Biol.Unit 1 (32 KB)
Header - Biol.Unit 1
Biol.Unit 2 (32 KB)
Header - Biol.Unit 2
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1VHR
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
