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1VGY
Asym. Unit
Info
Asym.Unit (137 KB)
Biol.Unit 1 (132 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF SUCCINYL DIAMINOPIMELATE DESUCCINYLASE
Authors
:
Structural Genomix
Date
:
03 Nov 03 (Deposition) - 25 Nov 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Structural Genomics, Unknown Function
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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Reference
:
J. Badger, J. M. Sauder, J. M. Adams, S. Antonysamy, K. Bain, M. G. Bergseid, S. G. Buchanan, M. D. Buchanan, Y. Batiyenko, J. A. Christopher, S. Emtage, A. Eroshkina, I. Feil, E. B. Furlong, K. S. Gajiwala, X. Gao, D. He, J. Hendle, A. Huber, K. Hoda, P. Kearins, C. Kissinger, B. Laubert, H. A. Lewis, J. Lin, K. Loomis, D. Lorimer, G. Louie, M. Maletic, C. D. Marsh, I. Miller, J. Molinari, H. J. Muller-Dieckmann, J. M. Newman, B. W. Noland, B. Pagarigan, F. Park, T. S. Peat, K. W. Post, S. Radojicic, A. Ramos, R. Romero, M. E. Rutter, W. E. Sanderson, K. D. Schwinn, J. Tresser, J. Winhoven, T. A. Wright, L. Wu, J. Xu, T. J. Harris
Structural Analysis Of A Set Of Proteins Resulting From A Bacterial Genomics Project
Proteins V. 60 787 2005
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Hetero Components
(1, 10)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1b: SELENOMETHIONINE (MSEb)
1c: SELENOMETHIONINE (MSEc)
1d: SELENOMETHIONINE (MSEd)
1e: SELENOMETHIONINE (MSEe)
1f: SELENOMETHIONINE (MSEf)
1g: SELENOMETHIONINE (MSEg)
1h: SELENOMETHIONINE (MSEh)
1i: SELENOMETHIONINE (MSEi)
1j: SELENOMETHIONINE (MSEj)
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No.
Name
Count
Type
Full Name
1
MSE
10
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(0, 0)
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1vgya2 (A:181-293)
1b: SCOP_d1vgyb2 (B:181-293)
2a: SCOP_d1vgya1 (A:2-180,A:294-376)
2b: SCOP_d1vgyb1 (B:2-180,B:294-376)
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Protein Domains
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Organisms
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(
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
Bacterial exopeptidase dimerisation domain
(12)
Family
:
Bacterial exopeptidase dimerisation domain
(12)
Protein domain
:
Succinyl-diaminopimelate desuccinylase
(1)
Neisseria meningitidis [TaxId: 487]
(1)
1a
d1vgya2
A:181-293
1b
d1vgyb2
B:181-293
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Phosphorylase/hydrolase-like
(558)
Superfamily
:
Zn-dependent exopeptidases
(214)
Family
:
Bacterial dinuclear zinc exopeptidases
(55)
Protein domain
:
Succinyl-diaminopimelate desuccinylase, catalytic domain
(1)
Neisseria meningitidis [TaxId: 487]
(1)
2a
d1vgya1
A:2-180,A:294-376
2b
d1vgyb1
B:2-180,B:294-376
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1vgyA02 (A:180-293)
1b: CATH_1vgyB02 (B:180-293)
2a: CATH_1vgyA01 (A:2-179,A:294-376)
2b: CATH_1vgyB01 (B:2-179,B:294-376)
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)
Organisms
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)
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)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Alpha-Beta Plaits
(1688)
Homologous Superfamily
:
[code=3.30.70.360, no name defined]
(23)
Neisseria meningitidis mc58. Organism_taxid: 122586. Strain: mc58.
(1)
1a
1vgyA02
A:180-293
1b
1vgyB02
B:180-293
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Aminopeptidase
(284)
Homologous Superfamily
:
Zn peptidases
(137)
Neisseria meningitidis mc58. Organism_taxid: 122586. Strain: mc58.
(1)
2a
1vgyA01
A:2-179,A:294-376
2b
1vgyB01
B:2-179,B:294-376
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Peptidase_M20_1vgyB01 (B:64-374)
1b: PFAM_Peptidase_M20_1vgyB02 (B:64-374)
2a: PFAM_M20_dimer_1vgyB03 (B:177-285)
2b: PFAM_M20_dimer_1vgyB04 (B:177-285)
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Clan
:
Peptidase_MH
(119)
Family
:
Peptidase_M20
(17)
Neisseria meningitidis serogroup B
(1)
1a
Peptidase_M20-1vgyB01
B:64-374
1b
Peptidase_M20-1vgyB02
B:64-374
Clan
:
no clan defined [family: M20_dimer]
(13)
Family
:
M20_dimer
(13)
Neisseria meningitidis serogroup B
(1)
2a
M20_dimer-1vgyB03
B:177-285
2b
M20_dimer-1vgyB04
B:177-285
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Asymmetric Unit 1
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Asym.Unit (137 KB)
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