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1VFG
Biol. Unit 1
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Asym.Unit (154 KB)
Biol.Unit 1 (74 KB)
Biol.Unit 2 (77 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF TRNA NUCLEOTIDYLTRANSFERASE COMPLEXED WITH A PRIMER TRNA AND AN INCOMING ATP ANALOG
Authors
:
K. Tomita, S. Fukai, R. Ishitani, T. Ueda, N. Takeuchi, D. G. Vassylyev, O. Nureki, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
13 Apr 04 (Deposition) - 10 Aug 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Transferase, Rna, Riken Structural Genomics/Proteomics Initiative, Rsgi, Structural Genomics, Transferase/Rna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Tomita, S. Fukai, R. Ishitani, T. Ueda, N. Takeuchi, D. G. Vassylyev, O. Nureki
Structural Basis For Template-Independent Rna Polymerization.
Nature V. 430 700 2004
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
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All Hetero Components
1a: DIPHOSPHOMETHYLPHOSPHONIC ACID ADE... (APCa)
1b: DIPHOSPHOMETHYLPHOSPHONIC ACID ADE... (APCb)
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Type
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1
APC
1
Ligand/Ion
DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER
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Sites
(1, 1)
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1: AC1 (SOFTWARE)
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Description
1
AC1
SOFTWARE
GLY A:18 , ARG A:21 , ASP A:22 , ARG A:104 , ASP A:105 , ASP A:149 , ARG A:152 , ARG A:155 , ARG A:158 , ARG A:162 , ARG A:191 , HOH A:501 , HOH A:505 , HOH A:520
BINDING SITE FOR RESIDUE APC A 500
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(0, 0)
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SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1vfga1 (A:137-351)
1b: SCOP_d1vfgb1 (B:137-351)
2a: SCOP_d1vfga2 (A:1-136)
2b: SCOP_d1vfgb2 (B:1-136)
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Class
:
All alpha proteins
(14657)
Fold
:
Poly A polymerase C-terminal region-like
(5)
Superfamily
:
Poly A polymerase C-terminal region-like
(5)
Family
:
Poly A polymerase C-terminal region-like
(5)
Protein domain
:
Poly A polymerase PcnB
(1)
Aquifex aeolicus [TaxId: 63363]
(1)
1a
d1vfga1
A:137-351
1b
d1vfgb1
B:137-351
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Nucleotidyltransferase
(287)
Superfamily
:
Nucleotidyltransferase
(287)
Family
:
Poly A polymerase head domain-like
(5)
Protein domain
:
Poly A polymerase PcnB
(1)
Aquifex aeolicus [TaxId: 63363]
(1)
2a
d1vfga2
A:1-136
2b
d1vfgb2
B:1-136
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Pfam Domains
(1, 2)
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all PFAM domains
1a: PFAM_PolyA_pol_1vfgB01 (B:13-139)
1b: PFAM_PolyA_pol_1vfgB02 (B:13-139)
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NTP_transf
(45)
Family
:
PolyA_pol
(4)
Aquifex aeolicus
(1)
1a
PolyA_pol-1vfgB01
B:13-139
1b
PolyA_pol-1vfgB02
B:13-139
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Asymmetric Unit 1
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Asym.Unit (154 KB)
Header - Asym.Unit
Biol.Unit 1 (74 KB)
Header - Biol.Unit 1
Biol.Unit 2 (77 KB)
Header - Biol.Unit 2
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