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1VF3
Asym. Unit
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Asym.Unit (84 KB)
Biol.Unit 1 (80 KB)
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(1)
Title
:
CGSTA1-1 IN COMPLEX WITH GLUTATHIONE CONJUGATE OF CDNB
Authors
:
S. C. Lin, Y. C. Lo, M. F. Tam, Y. C. Liaw
Date
:
07 Apr 04 (Deposition) - 23 Aug 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.15
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Glutathione, Detoxification, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. C. Lin, Y. C. Lo, M. F. Tam, Y. C. Liaw
Crystal Structures Of Chicken Glutathione S-Transferase A1-1
To Be Published
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(2, 3)
Info
All Hetero Components
1a: ACETIC ACID (ACYa)
2a: GLUTATHIONE S-(2,4 DINITROBENZENE) (GDNa)
2b: GLUTATHIONE S-(2,4 DINITROBENZENE) (GDNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACY
1
Ligand/Ion
ACETIC ACID
2
GDN
2
Ligand/Ion
GLUTATHIONE S-(2,4 DINITROBENZENE)
[
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]
Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:9 , GLY A:14 , LYS A:15 , GLN A:54 , VAL A:55 , GLN A:67 , THR A:68 , LEU A:107 , SER A:108 , PHE A:111 , MET A:222 , TYR A:223 , VAL A:226 , HOH A:4045 , HOH A:4075 , HOH A:4089 , HOH A:4136 , ASP B:1101 , ARG B:1131
BINDING SITE FOR RESIDUE GDN A 2500
2
AC2
SOFTWARE
ASP A:101 , ARG A:131 , TYR B:1009 , LYS B:1015 , GLN B:1054 , VAL B:1055 , GLN B:1067 , THR B:1068 , LEU B:1107 , SER B:1108 , PHE B:1111 , MET B:1222 , TYR B:1223 , HOH B:4042 , HOH B:4148
BINDING SITE FOR RESIDUE GDN B 3600
[
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]
SAPs(SNPs)/Variants
(9, 18)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_GSTA3_CHICK_001 (L1045V, chain A/B, )
2: VAR_GSTA3_CHICK_002 (S1047A, chain A/B, )
3: VAR_GSTA3_CHICK_003 (I1049F, chain A/B, )
4: VAR_GSTA3_CHICK_004 (I1049V, chain A/B, )
5: VAR_GSTA3_CHICK_005 (F1052R, chain A/B, )
6: VAR_GSTA3_CHICK_006 (W1155R, chain A/B, )
7: VAR_GSTA3_CHICK_007 (A1163T, chain A/B, )
8: VAR_GSTA3_CHICK_008 (M1166A, chain A/B, )
9: VAR_GSTA3_CHICK_009 (E1168V, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_GSTA3_CHICK_001
*
L
45
V
GSTA3_CHICK
---
---
A
B
L
45
1045
V
2
UniProt
VAR_GSTA3_CHICK_002
*
S
47
A
GSTA3_CHICK
---
---
A
B
S
47
1047
A
3
UniProt
VAR_GSTA3_CHICK_003
*
I
49
F
GSTA3_CHICK
---
---
A
B
I
49
1049
F
4
UniProt
VAR_GSTA3_CHICK_004
*
I
49
V
GSTA3_CHICK
---
---
A
B
I
49
1049
V
5
UniProt
VAR_GSTA3_CHICK_005
*
F
52
R
GSTA3_CHICK
---
---
A
B
F
52
1052
R
6
UniProt
VAR_GSTA3_CHICK_006
*
W
155
R
GSTA3_CHICK
---
---
A
B
W
155
1155
R
7
UniProt
VAR_GSTA3_CHICK_007
*
A
163
T
GSTA3_CHICK
---
---
A
B
A
163
1163
T
8
UniProt
VAR_GSTA3_CHICK_008
*
M
166
A
GSTA3_CHICK
---
---
A
B
M
166
1166
A
9
UniProt
VAR_GSTA3_CHICK_009
*
E
168
V
GSTA3_CHICK
---
---
A
B
E
168
1168
V
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: GST_CTER (A:85-207,B:1085-1207)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GST_CTER
PS50405
Soluble glutathione S-transferase C-terminal domain profile.
GSTA3_CHICK
85-207
2
A:85-207
B:1085-1207
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1vf3a2 (A:81-228)
1b: SCOP_d1vf3b2 (B:1081-1228)
2a: SCOP_d1vf3a1 (A:4-80)
2b: SCOP_d1vf3b1 (B:1004-1080)
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
GST C-terminal domain-like
(353)
Superfamily
:
GST C-terminal domain-like
(353)
Family
:
automated matches
(86)
Protein domain
:
automated matches
(86)
Chicken (Gallus gallus) [TaxId: 9031]
(4)
1a
d1vf3a2
A:81-228
1b
d1vf3b2
B:1081-1228
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thioredoxin fold
(994)
Superfamily
:
Thioredoxin-like
(992)
Family
:
automated matches
(347)
Protein domain
:
automated matches
(347)
Chicken (Gallus gallus) [TaxId: 9031]
(4)
2a
d1vf3a1
A:4-80
2b
d1vf3b1
B:1004-1080
[
close SCOP info
]
CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1vf3A01 (A:4-81,A:191-228)
1b: CATH_1vf3B01 (B:1004-1081,B:1191-1228)
2a: CATH_1vf3A02 (A:82-190)
2b: CATH_1vf3B02 (B:1082-1190)
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(
)
(
)
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)
(
)
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(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Glutaredoxin
(620)
Homologous Superfamily
:
Glutaredoxin
(617)
Chicken (Gallus gallus)
(6)
1a
1vf3A01
A:4-81,A:191-228
1b
1vf3B01
B:1004-1081,B:1191-1228
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2
(267)
Homologous Superfamily
:
[code=1.20.1050.10, no name defined]
(249)
Chicken (Gallus gallus)
(6)
2a
1vf3A02
A:82-190
2b
1vf3B02
B:1082-1190
[
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]
Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_GST_C_1vf3B01 (B:1099-1192)
1b: PFAM_GST_C_1vf3B02 (B:1099-1192)
2a: PFAM_GST_N_1vf3B03 (B:1005-1077)
2b: PFAM_GST_N_1vf3B04 (B:1005-1077)
View:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
GST_C
(118)
Family
:
GST_C
(102)
Gallus gallus (Chicken)
(3)
1a
GST_C-1vf3B01
B:1099-1192
1b
GST_C-1vf3B02
B:1099-1192
Clan
:
Thioredoxin
(367)
Family
:
GST_N
(88)
Gallus gallus (Chicken)
(3)
2a
GST_N-1vf3B03
B:1005-1077
2b
GST_N-1vf3B04
B:1005-1077
[
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]
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