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1VEC
Biol. Unit 3
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Asym.Unit (77 KB)
Biol.Unit 1 (38 KB)
Biol.Unit 2 (38 KB)
Biol.Unit 3 (73 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE N-TERMINAL DOMAIN OF RCK/P54, A HUMAN DEAD-BOX PROTEIN
Authors
:
K. Hogetsu, T. Matsui, Y. Yukihiro, M. Tanaka, T. Sato, T. Kumasaka, N. Tanaka
Date
:
29 Mar 04 (Deposition) - 13 Apr 04 (Release) - 29 Apr 08 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.01
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: A,B (1x)
Keywords
:
Rna Helicase, Dead-Box Protein, Rna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Matsui, K. Hogetsu, J. Usukura, T. Sato, T. Kumasaka, Y. Akao, N. Tanaka
Structural Insight Of Human Dead-Box Protein Rck/P54 Into Its Substrate Recognition With Conformational Changes
Genes Cells V. 11 439 2006
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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All Hetero Components
1a: L(+)-TARTARIC ACID (TLAa)
2a: ZINC ION (ZNa)
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Sites
(2, 2)
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1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU A:102 , HIS A:179 , GLU B:106 , ASP B:202
BINDING SITE FOR RESIDUE ZN A 1001
2
AC2
SOFTWARE
ARG A:128 , THR A:268 , PHE A:269 , PRO A:270 , HOH A:1070 , HOH A:1108 , ARG B:163 , THR B:189 , GLY B:190 , THR B:211 , GLY B:213 , ARG B:214 , HOH B:2002 , HOH B:2014 , HOH B:2017
BINDING SITE FOR RESIDUE TLA B 2001
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(2, 4)
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1: Q_MOTIF (A:85-113,B:85-113)
2: DEAD_ATP_HELICASE (A:233-241,B:233-241)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
Q_MOTIF
PS51195
DEAD-box RNA helicase Q motif profile.
DDX6_HUMAN
96-124
2
A:85-113
B:85-113
2
DEAD_ATP_HELICASE
PS00039
DEAD-box subfamily ATP-dependent helicases signature.
DDX6_HUMAN
244-252
2
A:233-241
B:233-241
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SCOP Domains
(1, 2)
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All SCOP Domains
1a: SCOP_d1veca_ (A:)
1b: SCOP_d1vecb_ (B:)
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
Tandem AAA-ATPase domain
(59)
Protein domain
:
DEAD box RNA helicase rck/p54
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1veca_
A:
1b
d1vecb_
B:
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CATH Domains
(1, 2)
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all CATH domains
1a: CATH_1vecA00 (A:83-288)
1b: CATH_1vecB00 (B:83-288)
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Human (Homo sapiens)
(413)
1a
1vecA00
A:83-288
1b
1vecB00
B:83-288
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Pfam Domains
(1, 2)
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all PFAM domains
1a: PFAM_DEAD_1vecB01 (B:109-276)
1b: PFAM_DEAD_1vecB02 (B:109-276)
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Clan
:
P-loop_NTPase
(1112)
Family
:
DEAD
(41)
Homo sapiens (Human)
(12)
1a
DEAD-1vecB01
B:109-276
1b
DEAD-1vecB02
B:109-276
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Asym.Unit (77 KB)
Header - Asym.Unit
Biol.Unit 1 (38 KB)
Header - Biol.Unit 1
Biol.Unit 2 (38 KB)
Header - Biol.Unit 2
Biol.Unit 3 (73 KB)
Header - Biol.Unit 3
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