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1VC4
Biol. Unit 2
Info
Asym.Unit (99 KB)
Biol.Unit 1 (48 KB)
Biol.Unit 2 (49 KB)
Biol.Unit 3 (95 KB)
Biol.Unit 4 (94 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF INDOLE-3-GLYCEROL PHOSPHATE SYNTHASE (TRPC) FROM THERMUS THERMOPHILUS AT 1.8 A RESOLUTION
Authors
:
B. Bagautdinov, T. H. Tahirov, Riken Structural Genomics/Proteomi Initiative (Rsgi)
Date
:
04 Mar 04 (Deposition) - 23 Mar 04 (Release) - 29 Oct 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: A,B (1x)
Biol. Unit 4: A,B (1x)
Keywords
:
Lyase, Tryptophan Biosynthesis, Riken Structural Genomics/Proteomics Initiative, Rsgi, Structural Genomics
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Bagautdinov, K. Yutani
Structure Of Indole-3-Glycerol Phosphate Synthase From Thermus Thermophilus Hb8: Implications For Thermal Stability.
Acta Crystallogr. , Sect. D V. 67 1054 2011
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Hetero Components
(3, 9)
Info
All Hetero Components
1a: ACETIC ACID (ACYa)
1b: ACETIC ACID (ACYb)
1c: ACETIC ACID (ACYc)
1d: ACETIC ACID (ACYd)
1e: ACETIC ACID (ACYe)
2a: GLYCEROL (GOLa)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
3j: SULFATE ION (SO4j)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACY
3
Ligand/Ion
ACETIC ACID
2
GOL
1
Ligand/Ion
GLYCEROL
3
SO4
5
Ligand/Ion
SULFATE ION
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Sites
(12, 12)
Info
All Sites
01: AC2 (SOFTWARE)
02: AC3 (SOFTWARE)
03: AC5 (SOFTWARE)
04: AC6 (SOFTWARE)
05: AC7 (SOFTWARE)
06: AC8 (SOFTWARE)
07: AC9 (SOFTWARE)
08: BC1 (SOFTWARE)
09: BC3 (SOFTWARE)
10: BC4 (SOFTWARE)
11: BC6 (SOFTWARE)
12: BC7 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC2
SOFTWARE
ARG A:43 , ARG A:80 , HOH A:3031 , HOH A:3181 , ARG B:43 , ARG B:80 , HOH B:3012
BINDING SITE FOR RESIDUE SO4 A 2002
02
AC3
SOFTWARE
LYS B:53 , SER B:215 , GLY B:216 , ILE B:235 , GLY B:236 , THR B:237 , HOH B:3006 , HOH B:3039 , HOH B:3048 , HOH B:3245 , HOH B:3346
BINDING SITE FOR RESIDUE SO4 B 2003
03
AC5
SOFTWARE
THR B:163 , GLU B:164 , ARG B:197 , HOH B:3071 , HOH B:3192 , HOH B:3230
BINDING SITE FOR RESIDUE SO4 B 2005
04
AC6
SOFTWARE
MET B:1 , ARG B:2 , ARG B:76 , HOH B:3047 , HOH B:3198
BINDING SITE FOR RESIDUE SO4 B 2006
05
AC7
SOFTWARE
THR A:163 , ARG A:165 , HOH A:3302 , HOH B:3337
BINDING SITE FOR RESIDUE SO4 A 2007
06
AC8
SOFTWARE
THR A:163 , GLU A:164 , ARG A:197 , HOH A:3212 , HOH A:3302 , LYS B:220 , GLU B:251
BINDING SITE FOR RESIDUE SO4 B 2008
07
AC9
SOFTWARE
PRO A:44 , GLY A:45 , HOH A:3326 , ARG B:250
BINDING SITE FOR RESIDUE SO4 A 2009
08
BC1
SOFTWARE
ARG A:250 , PRO B:44 , GLY B:45
BINDING SITE FOR RESIDUE SO4 B 2010
09
BC3
SOFTWARE
LYS B:53 , SER B:58 , ARG B:183 , HOH B:3049 , HOH B:3051 , HOH B:3058 , HOH B:3346
BINDING SITE FOR RESIDUE ACY B 3002
10
BC4
SOFTWARE
ARG B:63 , PRO B:243 , ASP B:244 , LEU B:245 , HOH B:3024
BINDING SITE FOR RESIDUE ACY B 3003
11
BC6
SOFTWARE
ARG B:19 , ARG B:111 , MET B:120 , GLU B:123 , HOH B:3138
BINDING SITE FOR RESIDUE ACY B 3005
12
BC7
SOFTWARE
LEU B:201 , ARG B:205 , HOH B:3325
BINDING SITE FOR RESIDUE GOL B 1001
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1vc4a_ (A:)
1b: SCOP_d1vc4b_ (B:)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Ribulose-phoshate binding barrel
(356)
Family
:
Tryptophan biosynthesis enzymes
(108)
Protein domain
:
Indole-3-glycerophosphate synthase, IPGS
(11)
Thermus thermophilus [TaxId: 274]
(1)
1a
d1vc4a_
A:
1b
d1vc4b_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1vc4A00 (A:1-254)
1b: CATH_1vc4B00 (B:1-254)
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)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Aldolase class I
(887)
Thermus thermophilus. Organism_taxid: 274.
(3)
1a
1vc4A00
A:1-254
1b
1vc4B00
B:1-254
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_IGPS_1vc4B01 (B:14-252)
1b: PFAM_IGPS_1vc4B02 (B:14-252)
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Clan
:
TIM_barrel
(694)
Family
:
IGPS
(10)
Thermus thermophilus
(1)
1a
IGPS-1vc4B01
B:14-252
1b
IGPS-1vc4B02
B:14-252
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Chain B
Asymmetric Unit 1
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Asym.Unit (99 KB)
Header - Asym.Unit
Biol.Unit 1 (48 KB)
Header - Biol.Unit 1
Biol.Unit 2 (49 KB)
Header - Biol.Unit 2
Biol.Unit 3 (95 KB)
Header - Biol.Unit 3
Biol.Unit 4 (94 KB)
Header - Biol.Unit 4
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