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1VBU
Asym. Unit
Info
Asym.Unit (125 KB)
Biol.Unit 1 (63 KB)
Biol.Unit 2 (61 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF NATIVE XYLANASE 10B FROM THERMOTOGA MARITIMA
Authors
:
Ihsanawati, T. Kumasaka, T. Kaneko, S. Nakamura, N. Tanaka
Date
:
02 Mar 04 (Deposition) - 28 Jun 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Xylanase 10B, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Ihsanawati, T. Kumasaka, T. Kaneko, C. Morokuma, R. Yatsunami, T. Sato, S. Nakamura, N. Tanaka
Structural Basis Of The Substrate Subsite And The Highly Thermal Stability Of Xylanase 10B From Thermotoga Maritima Msb8
Proteins V. 61 999 2005
(for further references see the
PDB file header
)
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Hetero Components
(3, 9)
Info
All Hetero Components
1a: ACETIC ACID (ACYa)
1b: ACETIC ACID (ACYb)
1c: ACETIC ACID (ACYc)
1d: ACETIC ACID (ACYd)
1e: ACETIC ACID (ACYe)
1f: ACETIC ACID (ACYf)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
3a: SULFATE ION (SO4a)
View:
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No.
Name
Count
Type
Full Name
1
ACY
6
Ligand/Ion
ACETIC ACID
2
GOL
2
Ligand/Ion
GLYCEROL
3
SO4
1
Ligand/Ion
SULFATE ION
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:575 , ARG B:575 , ASN B:577 , HOH B:4013
BINDING SITE FOR RESIDUE SO4 A 3001
2
AC2
SOFTWARE
GLY A:608 , LYS B:744
BINDING SITE FOR RESIDUE ACY A 2001
3
AC3
SOFTWARE
ASN A:577 , HOH A:1128
BINDING SITE FOR RESIDUE ACY A 2002
4
AC4
SOFTWARE
ASN A:696 , ALA A:697 , HOH B:4004
BINDING SITE FOR RESIDUE ACY A 2003
5
AC5
SOFTWARE
TYR A:690 , HIS A:724 , HOH A:964
BINDING SITE FOR RESIDUE ACY A 2004
6
AC6
SOFTWARE
HOH A:842 , ALA B:697 , HOH B:4033
BINDING SITE FOR RESIDUE ACY B 2005
7
AC7
SOFTWARE
TYR B:690 , HIS B:724 , HOH B:4077
BINDING SITE FOR RESIDUE ACY B 2006
8
AC8
SOFTWARE
LYS A:565 , HIS A:598 , TRP A:602 , GLU A:647 , HIS A:724 , GLU A:753 , TRP A:794 , TRP A:802 , HOH A:964 , HOH A:1051 , HOH A:1458
BINDING SITE FOR RESIDUE GOL A 4001
9
AC9
SOFTWARE
LYS B:565 , HIS B:598 , TRP B:602 , GLU B:647 , HIS B:724 , GLU B:753 , TRP B:794
BINDING SITE FOR RESIDUE GOL B 4002
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1vbua_ (A:)
1b: SCOP_d1vbub_ (B:)
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)
Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
(Trans)glycosidases
(1191)
Family
:
automated matches
(180)
Protein domain
:
automated matches
(180)
Thermotoga maritima [TaxId: 2336]
(4)
1a
d1vbua_
A:
1b
d1vbub_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1vbuA00 (A:517-840)
1b: CATH_1vbuB00 (B:517-840)
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Organisms
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)
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Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Glycosidases
(843)
Thermotoga maritima. Organism_taxid: 2336.
(28)
1a
1vbuA00
A:517-840
1b
1vbuB00
B:517-840
[
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Glyco_hydro_10_1vbuB01 (B:518-833)
1b: PFAM_Glyco_hydro_10_1vbuB02 (B:518-833)
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Clans
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(
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)
Clan
:
Glyco_hydro_tim
(488)
Family
:
Glyco_hydro_10
(42)
Thermotoga maritima
(2)
1a
Glyco_hydro_10-1vbuB01
B:518-833
1b
Glyco_hydro_10-1vbuB02
B:518-833
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Asym.Unit (125 KB)
Header - Asym.Unit
Biol.Unit 1 (63 KB)
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