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1VBO
Biol. Unit 1
Info
Asym.Unit (208 KB)
Biol.Unit 1 (102 KB)
Biol.Unit 2 (103 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ARTOCARPIN-MANNOTRIOSE COMPLEX
Authors
:
A. A. Jeyaprakash, A. Srivastav, A. Surolia, M. Vijayan
Date
:
28 Feb 04 (Deposition) - 15 Jun 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.35
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Keywords
:
Beta-Prism, Mannose-Specific, Lectin, Jacalin-Like, Plant Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. A. Jeyaprakash, A. Srivastav, A. Surolia, M. Vijayan
Structural Basis For The Carbohydrate Specificities Of Artocarpin: Variation In The Length Of A Loop As A Strategy For Generating Ligand Specificity
J. Mol. Biol. V. 338 757 2004
(for further references see the
PDB file header
)
[
close entry info
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Hetero Components
(2, 14)
Info
All Hetero Components
1a: N-ACETYLALANINE (AYAa)
1b: N-ACETYLALANINE (AYAb)
1c: N-ACETYLALANINE (AYAc)
1d: N-ACETYLALANINE (AYAd)
1e: N-ACETYLALANINE (AYAe)
1f: N-ACETYLALANINE (AYAf)
1g: N-ACETYLALANINE (AYAg)
1h: N-ACETYLALANINE (AYAh)
2a: ALPHA-D-MANNOSE (MANa)
2b: ALPHA-D-MANNOSE (MANb)
2c: ALPHA-D-MANNOSE (MANc)
2d: ALPHA-D-MANNOSE (MANd)
2e: ALPHA-D-MANNOSE (MANe)
2f: ALPHA-D-MANNOSE (MANf)
2g: ALPHA-D-MANNOSE (MANg)
2h: ALPHA-D-MANNOSE (MANh)
2i: ALPHA-D-MANNOSE (MANi)
2j: ALPHA-D-MANNOSE (MANj)
2k: ALPHA-D-MANNOSE (MANk)
2l: ALPHA-D-MANNOSE (MANl)
2m: ALPHA-D-MANNOSE (MANm)
2n: ALPHA-D-MANNOSE (MANn)
2o: ALPHA-D-MANNOSE (MANo)
2p: ALPHA-D-MANNOSE (MANp)
2q: ALPHA-D-MANNOSE (MANq)
2r: ALPHA-D-MANNOSE (MANr)
2s: ALPHA-D-MANNOSE (MANs)
2t: ALPHA-D-MANNOSE (MANt)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AYA
4
Mod. Amino Acid
N-ACETYLALANINE
2
MAN
10
Ligand/Ion
ALPHA-D-MANNOSE
[
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: CC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:14 , GLY A:15 , THR A:91 , THR A:93 , GLY A:137 , ASP A:138 , LEU A:139 , ASP A:141 , MAN A:406 , HOH A:434 , HOH A:435
BINDING SITE FOR RESIDUE MAN A 405
02
AC2
SOFTWARE
LEU A:89 , ALA A:90 , THR A:91 , ASP A:138 , MAN A:405 , MAN A:407 , HOH A:441
BINDING SITE FOR RESIDUE MAN A 406
03
AC3
SOFTWARE
MAN A:406
BINDING SITE FOR RESIDUE MAN A 407
04
AC4
SOFTWARE
GLY B:14 , GLY B:15 , THR B:91 , THR B:93 , GLY B:137 , ASP B:138 , LEU B:139 , ASP B:141 , MAN B:406 , HOH B:462
BINDING SITE FOR RESIDUE MAN B 405
05
AC5
SOFTWARE
LEU B:89 , ALA B:90 , THR B:91 , ASP B:138 , MAN B:405 , MAN B:407 , ASP E:73
BINDING SITE FOR RESIDUE MAN B 406
06
AC6
SOFTWARE
MAN B:406
BINDING SITE FOR RESIDUE MAN B 407
07
AC7
SOFTWARE
GLY C:14 , GLY C:15 , THR C:91 , THR C:93 , GLY C:137 , ASP C:138 , LEU C:139 , ASP C:141 , MAN C:406 , HOH C:428 , HOH C:430 , HOH C:459
BINDING SITE FOR RESIDUE MAN C 405
08
AC8
SOFTWARE
LEU C:89 , ALA C:90 , THR C:91 , ASP C:138 , MAN C:405 , MAN C:407 , HOH C:449
BINDING SITE FOR RESIDUE MAN C 406
09
AC9
SOFTWARE
ALA C:90 , MAN C:406 , HOH C:465 , LYS D:55 , THR D:57
BINDING SITE FOR RESIDUE MAN C 407
10
BC1
SOFTWARE
GLY D:15 , THR D:91 , GLY D:137 , ASP D:138 , LEU D:139 , ASP D:141
BINDING SITE FOR RESIDUE MAN D 1405
11
CC2
SOFTWARE
AYA A:1 , PRO C:72 , HOH C:481 , MAN H:406
BINDING SITE FOR RESIDUE MAN H 407
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
Info
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;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d1vboa_ (A:)
1b: SCOP_d1vbob_ (B:)
1c: SCOP_d1vboc_ (C:)
1d: SCOP_d1vbod_ (D:)
1e: SCOP_d1vboe_ (E:)
1f: SCOP_d1vbof_ (F:)
1g: SCOP_d1vbog_ (G:)
1h: SCOP_d1vboh_ (H:)
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)
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(
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
beta-Prism I
(50)
Superfamily
:
Mannose-binding lectins
(42)
Family
:
Mannose-binding lectins
(32)
Protein domain
:
Artocarpin
(5)
Jackfruit (Artocarpus heterophyllus) [TaxId: 3489]
(5)
1a
d1vboa_
A:
1b
d1vbob_
B:
1c
d1vboc_
C:
1d
d1vbod_
D:
1e
d1vboe_
E:
1f
d1vbof_
F:
1g
d1vbog_
G:
1h
d1vboh_
H:
[
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_1vboA00 (A:2-149)
1b: CATH_1vboB00 (B:2-149)
1c: CATH_1vboC00 (C:2-149)
1d: CATH_1vboD00 (D:2-149)
1e: CATH_1vboE00 (E:2-149)
1f: CATH_1vboF00 (F:2-149)
1g: CATH_1vboG00 (G:2-149)
1h: CATH_1vboH00 (H:2-149)
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)
(
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(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Aligned Prism
(39)
Topology
:
Vitelline Membrane Outer Layer Protein I, subunit A
(39)
Homologous Superfamily
:
[code=2.100.10.30, no name defined]
(33)
Artocarpus integer. Organism_taxid: 3490.
(13)
1a
1vboA00
A:2-149
1b
1vboB00
B:2-149
1c
1vboC00
C:2-149
1d
1vboD00
D:2-149
1e
1vboE00
E:2-149
1f
1vboF00
F:2-149
1g
1vboG00
G:2-149
1h
1vboH00
H:2-149
[
close CATH info
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Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_Jacalin_1vboH01 (H:15-147)
1b: PFAM_Jacalin_1vboH02 (H:15-147)
1c: PFAM_Jacalin_1vboH03 (H:15-147)
1d: PFAM_Jacalin_1vboH04 (H:15-147)
1e: PFAM_Jacalin_1vboH05 (H:15-147)
1f: PFAM_Jacalin_1vboH06 (H:15-147)
1g: PFAM_Jacalin_1vboH07 (H:15-147)
1h: PFAM_Jacalin_1vboH08 (H:15-147)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: Jacalin]
(35)
Family
:
Jacalin
(35)
Artocarpus integer (Jack fruit) (Artocarpus integrifolia)
(15)
1a
Jacalin-1vboH01
H:15-147
1b
Jacalin-1vboH02
H:15-147
1c
Jacalin-1vboH03
H:15-147
1d
Jacalin-1vboH04
H:15-147
1e
Jacalin-1vboH05
H:15-147
1f
Jacalin-1vboH06
H:15-147
1g
Jacalin-1vboH07
H:15-147
1h
Jacalin-1vboH08
H:15-147
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Show PDB file:
Asym.Unit (208 KB)
Header - Asym.Unit
Biol.Unit 1 (102 KB)
Header - Biol.Unit 1
Biol.Unit 2 (103 KB)
Header - Biol.Unit 2
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