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Asym. Unit
Info
Asym.Unit (208 KB)
Biol.Unit 1 (102 KB)
Biol.Unit 2 (103 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ARTOCARPIN-MANNOTRIOSE COMPLEX
Authors
:
A. A. Jeyaprakash, A. Srivastav, A. Surolia, M. Vijayan
Date
:
28 Feb 04 (Deposition) - 15 Jun 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.35
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Keywords
:
Beta-Prism, Mannose-Specific, Lectin, Jacalin-Like, Plant Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. A. Jeyaprakash, A. Srivastav, A. Surolia, M. Vijayan
Structural Basis For The Carbohydrate Specificities Of Artocarpin: Variation In The Length Of A Loop As A Strategy For Generating Ligand Specificity
J. Mol. Biol. V. 338 757 2004
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 28)
Info
All Hetero Components
1a: N-ACETYLALANINE (AYAa)
1b: N-ACETYLALANINE (AYAb)
1c: N-ACETYLALANINE (AYAc)
1d: N-ACETYLALANINE (AYAd)
1e: N-ACETYLALANINE (AYAe)
1f: N-ACETYLALANINE (AYAf)
1g: N-ACETYLALANINE (AYAg)
1h: N-ACETYLALANINE (AYAh)
2a: ALPHA-D-MANNOSE (MANa)
2b: ALPHA-D-MANNOSE (MANb)
2c: ALPHA-D-MANNOSE (MANc)
2d: ALPHA-D-MANNOSE (MANd)
2e: ALPHA-D-MANNOSE (MANe)
2f: ALPHA-D-MANNOSE (MANf)
2g: ALPHA-D-MANNOSE (MANg)
2h: ALPHA-D-MANNOSE (MANh)
2i: ALPHA-D-MANNOSE (MANi)
2j: ALPHA-D-MANNOSE (MANj)
2k: ALPHA-D-MANNOSE (MANk)
2l: ALPHA-D-MANNOSE (MANl)
2m: ALPHA-D-MANNOSE (MANm)
2n: ALPHA-D-MANNOSE (MANn)
2o: ALPHA-D-MANNOSE (MANo)
2p: ALPHA-D-MANNOSE (MANp)
2q: ALPHA-D-MANNOSE (MANq)
2r: ALPHA-D-MANNOSE (MANr)
2s: ALPHA-D-MANNOSE (MANs)
2t: ALPHA-D-MANNOSE (MANt)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AYA
8
Mod. Amino Acid
N-ACETYLALANINE
2
MAN
20
Ligand/Ion
ALPHA-D-MANNOSE
[
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Sites
(20, 20)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:14 , GLY A:15 , THR A:91 , THR A:93 , GLY A:137 , ASP A:138 , LEU A:139 , ASP A:141 , MAN A:406 , HOH A:434 , HOH A:435
BINDING SITE FOR RESIDUE MAN A 405
02
AC2
SOFTWARE
LEU A:89 , ALA A:90 , THR A:91 , ASP A:138 , MAN A:405 , MAN A:407 , HOH A:441
BINDING SITE FOR RESIDUE MAN A 406
03
AC3
SOFTWARE
MAN A:406
BINDING SITE FOR RESIDUE MAN A 407
04
AC4
SOFTWARE
GLY B:14 , GLY B:15 , THR B:91 , THR B:93 , GLY B:137 , ASP B:138 , LEU B:139 , ASP B:141 , MAN B:406 , HOH B:462
BINDING SITE FOR RESIDUE MAN B 405
05
AC5
SOFTWARE
LEU B:89 , ALA B:90 , THR B:91 , ASP B:138 , MAN B:405 , MAN B:407 , ASP E:73
BINDING SITE FOR RESIDUE MAN B 406
06
AC6
SOFTWARE
MAN B:406
BINDING SITE FOR RESIDUE MAN B 407
07
AC7
SOFTWARE
GLY C:14 , GLY C:15 , THR C:91 , THR C:93 , GLY C:137 , ASP C:138 , LEU C:139 , ASP C:141 , MAN C:406 , HOH C:428 , HOH C:430 , HOH C:459
BINDING SITE FOR RESIDUE MAN C 405
08
AC8
SOFTWARE
LEU C:89 , ALA C:90 , THR C:91 , ASP C:138 , MAN C:405 , MAN C:407 , HOH C:449
BINDING SITE FOR RESIDUE MAN C 406
09
AC9
SOFTWARE
ALA C:90 , MAN C:406 , HOH C:465 , LYS D:55 , THR D:57
BINDING SITE FOR RESIDUE MAN C 407
10
BC1
SOFTWARE
GLY D:15 , THR D:91 , GLY D:137 , ASP D:138 , LEU D:139 , ASP D:141
BINDING SITE FOR RESIDUE MAN D 1405
11
BC2
SOFTWARE
GLY E:14 , GLY E:15 , THR E:91 , THR E:93 , GLY E:137 , ASP E:138 , LEU E:139 , ASP E:141 , MAN E:406 , HOH E:435 , HOH E:443
BINDING SITE FOR RESIDUE MAN E 405
12
BC3
SOFTWARE
ALA E:90 , THR E:91 , ASP E:138 , MAN E:405 , MAN E:407
BINDING SITE FOR RESIDUE MAN E 406
13
BC4
SOFTWARE
MAN E:406
BINDING SITE FOR RESIDUE MAN E 407
14
BC5
SOFTWARE
GLY F:15 , THR F:91 , THR F:93 , GLY F:137 , ASP F:138 , LEU F:139 , ASP F:141
BINDING SITE FOR RESIDUE MAN F 2405
15
BC6
SOFTWARE
GLY G:15 , THR G:91 , GLY G:137 , ASP G:138 , LEU G:139 , ASP G:141 , MAN G:406 , HOH G:412 , HOH G:413
BINDING SITE FOR RESIDUE MAN G 405
16
BC7
SOFTWARE
LEU G:89 , ALA G:90 , THR G:91 , ASP G:138 , MAN G:405 , MAN G:407 , HOH G:439
BINDING SITE FOR RESIDUE MAN G 406
17
BC8
SOFTWARE
ALA G:90 , MAN G:406 , HOH G:448
BINDING SITE FOR RESIDUE MAN G 407
18
BC9
SOFTWARE
GLY H:14 , GLY H:15 , THR H:91 , THR H:93 , GLY H:137 , ASP H:138 , LEU H:139 , ASP H:141 , MAN H:406 , HOH H:414 , HOH H:445
BINDING SITE FOR RESIDUE MAN H 405
19
CC1
SOFTWARE
LEU H:89 , ALA H:90 , THR H:91 , ASP H:138 , MAN H:405 , MAN H:407 , HOH H:437
BINDING SITE FOR RESIDUE MAN H 406
20
CC2
SOFTWARE
AYA A:1 , PRO C:72 , HOH C:481 , MAN H:406
BINDING SITE FOR RESIDUE MAN H 407
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d1vboa_ (A:)
1b: SCOP_d1vbob_ (B:)
1c: SCOP_d1vboc_ (C:)
1d: SCOP_d1vbod_ (D:)
1e: SCOP_d1vboe_ (E:)
1f: SCOP_d1vbof_ (F:)
1g: SCOP_d1vbog_ (G:)
1h: SCOP_d1vboh_ (H:)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
beta-Prism I
(50)
Superfamily
:
Mannose-binding lectins
(42)
Family
:
Mannose-binding lectins
(32)
Protein domain
:
Artocarpin
(5)
Jackfruit (Artocarpus heterophyllus) [TaxId: 3489]
(5)
1a
d1vboa_
A:
1b
d1vbob_
B:
1c
d1vboc_
C:
1d
d1vbod_
D:
1e
d1vboe_
E:
1f
d1vbof_
F:
1g
d1vbog_
G:
1h
d1vboh_
H:
[
close SCOP info
]
CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_1vboA00 (A:2-149)
1b: CATH_1vboB00 (B:2-149)
1c: CATH_1vboC00 (C:2-149)
1d: CATH_1vboD00 (D:2-149)
1e: CATH_1vboE00 (E:2-149)
1f: CATH_1vboF00 (F:2-149)
1g: CATH_1vboG00 (G:2-149)
1h: CATH_1vboH00 (H:2-149)
View:
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)
(
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Architectures
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(
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(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Aligned Prism
(39)
Topology
:
Vitelline Membrane Outer Layer Protein I, subunit A
(39)
Homologous Superfamily
:
[code=2.100.10.30, no name defined]
(33)
Artocarpus integer. Organism_taxid: 3490.
(13)
1a
1vboA00
A:2-149
1b
1vboB00
B:2-149
1c
1vboC00
C:2-149
1d
1vboD00
D:2-149
1e
1vboE00
E:2-149
1f
1vboF00
F:2-149
1g
1vboG00
G:2-149
1h
1vboH00
H:2-149
[
close CATH info
]
Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_Jacalin_1vboH01 (H:15-147)
1b: PFAM_Jacalin_1vboH02 (H:15-147)
1c: PFAM_Jacalin_1vboH03 (H:15-147)
1d: PFAM_Jacalin_1vboH04 (H:15-147)
1e: PFAM_Jacalin_1vboH05 (H:15-147)
1f: PFAM_Jacalin_1vboH06 (H:15-147)
1g: PFAM_Jacalin_1vboH07 (H:15-147)
1h: PFAM_Jacalin_1vboH08 (H:15-147)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: Jacalin]
(35)
Family
:
Jacalin
(35)
Artocarpus integer (Jack fruit) (Artocarpus integrifolia)
(15)
1a
Jacalin-1vboH01
H:15-147
1b
Jacalin-1vboH02
H:15-147
1c
Jacalin-1vboH03
H:15-147
1d
Jacalin-1vboH04
H:15-147
1e
Jacalin-1vboH05
H:15-147
1f
Jacalin-1vboH06
H:15-147
1g
Jacalin-1vboH07
H:15-147
1h
Jacalin-1vboH08
H:15-147
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