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1VBD
Biol. Unit 1
Info
Asym.Unit (143 KB)
Biol.Unit 1, α-C (7.8 MB)
Biol.Unit 1 (7.8 MB)
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(1)
Title
:
POLIOVIRUS (TYPE 1, MAHONEY STRAIN) COMPLEXED WITH R78206
Authors
:
R. A. Grant, C. N. Hiremath, D. J. Filman, R. Syed, K. Andries, J. M. Hogle
Date
:
02 Jan 96 (Deposition) - 11 Jul 96 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : 0,1,2,3,4
Biol. Unit 1: 0,1,2,3,4 (60x)
Keywords
:
Virus Coat Protein, Hydrolase, Thiol Protease, Icosahedral Virus, Virus
(Keyword Search:
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Reference
:
R. A. Grant, C. N. Hiremath, D. J. Filman, R. Syed, K. Andries, J. M. Hogl
Structures Of Poliovirus Complexes With Anti-Viral Drugs: Implications For Viral Stability And Drug Design.
Curr. Biol. V. 4 784 1994
(for further references see the
PDB file header
)
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Hetero Components
(2, 120)
Info
All Hetero Components
1a: (METHYLPYRIDAZINE PIPERIDINE PROPY... (J78a)
2a: MYRISTIC ACID (MYRa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
J78
60
Ligand/Ion
(METHYLPYRIDAZINE PIPERIDINE PROPYLOXYPHENYL)ETHYLACETATE
2
MYR
60
Ligand/Ion
MYRISTIC ACID
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY 4:2 , ALA 4:3 , ILE 4:30 , TYR 4:32
BINDING SITE FOR RESIDUE MYR 4 1
2
AC2
SOFTWARE
THR 1:111 , TYR 1:112 , MET 1:132 , ILE 1:157 , TYR 1:159 , PRO 1:181 , ILE 1:183 , ILE 1:194 , VAL 1:196 , TYR 1:205 , PHE 1:237 , LEU 1:240 , ALA 3:24
BINDING SITE FOR RESIDUE J78 1 500
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d1vbd_1 (4:,2:)
1b: SCOP_d1vbd1_ (1:)
1c: SCOP_d1vbd3_ (3:)
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Protein Domains
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Organisms
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)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Nucleoplasmin-like/VP (viral coat and capsid proteins)
(278)
Superfamily
:
Positive stranded ssRNA viruses
(163)
Family
:
Picornaviridae-like VP (VP1, VP2, VP3 and VP4)
(103)
Protein domain
:
Poliovirus coat proteins
(20)
Poliovirus type 3, strain Sabin [TaxId: 12086]
(7)
1a
d1vbd.1
4:,2:
1b
d1vbd1_
1:
1c
d1vbd3_
3:
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1vbd400 (4:2-69)
2a: CATH_1vbd300 (3:1-235)
2b: CATH_1vbd200 (2:7-272)
2c: CATH_1vbd100 (1:20-302)
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)
(
)
Organisms
(
)
(
)
Class
:
Few Secondary Structures
(1120)
Architecture
:
Irregular
(1120)
Topology
:
Rhinovirus 14, subunit 4
(101)
Homologous Superfamily
:
Rhinovirus 14, subunit 4
(68)
Human poliovirus 1 mahoney. Organism_taxid: 12081. Strain: mahoney.
(3)
1a
1vbd400
4:2-69
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
[code=2.60.120.20, no name defined]
(133)
Human poliovirus 1 mahoney. Organism_taxid: 12081. Strain: mahoney.
(3)
2a
1vbd300
3:1-235
2b
1vbd200
2:7-272
2c
1vbd100
1:20-302
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Rhv_1vbd301 (3:28-204)
1b: PFAM_Rhv_1vbd302 (3:28-204)
1c: PFAM_Rhv_1vbd303 (3:28-204)
2a: PFAM_Pico_P1A_1vbd401 (4:2-69)
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Clan
:
Viral_ssRNA_CP
(106)
Family
:
Rhv
(55)
Poliovirus type 1 (strain Mahoney)
(5)
1a
Rhv-1vbd301
3:28-204
1b
Rhv-1vbd302
3:28-204
1c
Rhv-1vbd303
3:28-204
Clan
:
no clan defined [family: Pico_P1A]
(41)
Family
:
Pico_P1A
(41)
Poliovirus type 1 (strain Mahoney)
(4)
2a
Pico_P1A-1vbd401
4:2-69
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Asym.Unit (143 KB)
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Biol.Unit 1 (7.8 MB)
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