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1V9U
Biol. Unit 1
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Asym.Unit (143 KB)
Biol.Unit 1, α-C (7.5 MB)
Biol.Unit 1 (7.5 MB)
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(1)
Title
:
HUMAN RHINOVIRUS 2 BOUND TO A FRAGMENT OF ITS CELLULAR RECEPTOR PROTEIN
Authors
:
N. Verdaguer, I. Fita, M. Reithmayer, R. Moser, D. Blaas
Date
:
03 Feb 04 (Deposition) - 04 May 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.60
Chains
:
Asym. Unit : 1,2,3,4,5
Biol. Unit 1: 1,2,3,4,5 (60x)
Keywords
:
Human Rhinovirus, Vldl-Receptor, Virus-Protein Complex, Icosahedral Virus, Virus/Receptor Complex
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
N. Verdaguer, I. Fita, M. Reithmayer, R. Moser, D. Blaas
X-Ray Structure Of A Minor Group Human Rhinovirus Bound To A Fragment Of Its Cellular Receptor Protein
Nat. Struct. Mol. Biol. V. 11 429 2004
(for further references see the
PDB file header
)
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Hetero Components
(1, 60)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
2a: LAURIC ACID (DAOa)
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Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
DAO
60
Ligand/Ion
LAURIC ACID
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Sites
(2, 2)
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All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TRP 5:132 , ASP 5:135 , GLU 5:137 , ASP 5:139 , ASP 5:145 , GLU 5:146
BINDING SITE FOR RESIDUE CA 5 1
2
AC2
SOFTWARE
ILE 1:99 , ASN 1:100 , LEU 1:101 , GLN 1:102 , ILE 1:123 , ASN 1:211
BINDING SITE FOR RESIDUE DAO 1 290
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(1, 60)
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LDLRA_1
PS01209
LDL-receptor class A (LDLRA) domain signature.
VLDLR_HUMAN
45-67
84-108
127-149
166-188
205-229
251-273
290-312
331-355
60
-
-
5:127-149
-
-
-
-
-
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1v9u_1 (4:,2:)
1b: SCOP_d1v9u1_ (1:)
1c: SCOP_d1v9u3_ (3:)
2a: SCOP_d1v9u5_ (5:)
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Class
:
All beta proteins
(24004)
Fold
:
Nucleoplasmin-like/VP (viral coat and capsid proteins)
(278)
Superfamily
:
Positive stranded ssRNA viruses
(163)
Family
:
Picornaviridae-like VP (VP1, VP2, VP3 and VP4)
(103)
Protein domain
:
Rhinovirus coat proteins
(46)
Human rhinovirus A 2 (HRV-2) [TaxId: 12130]
(2)
1a
d1v9u.1
4:,2:
1b
d1v9u1_
1:
1c
d1v9u3_
3:
Class
:
Small proteins
(3458)
Fold
:
LDL receptor-like module
(20)
Superfamily
:
LDL receptor-like module
(20)
Family
:
LDL receptor-like module
(19)
Protein domain
:
Very low-density lipoprotein receptor
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
2a
d1v9u5_
5:
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CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_1v9u300 (3:1-237)
1b: CATH_1v9u200 (2:12-261)
1c: CATH_1v9u100 (1:15-283)
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Organisms
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Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
[code=2.60.120.20, no name defined]
(133)
Human rhinovirus 2. Organism_taxid: 12130. Strain: serotype 2. Human rhinovirus 2. Organism_taxid: 12130. Strain: serotype 2. Human rhinovirus 2. Organism_taxid: 12130. Strain: serotype 2. Human rhinovirus 2. Organism_taxid: 12130. Strain: serotype 2.
(1)
1a
1v9u300
3:1-237
1b
1v9u200
2:12-261
1c
1v9u100
1:15-283
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Pfam Domains
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Asymmetric Unit 26
Asymmetric Unit 27
Asymmetric Unit 28
Asymmetric Unit 29
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Asymmetric Unit 31
Asymmetric Unit 32
Asymmetric Unit 33
Asymmetric Unit 34
Asymmetric Unit 35
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Asymmetric Unit 37
Asymmetric Unit 38
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Asymmetric Unit 46
Asymmetric Unit 47
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Asym.Unit (143 KB)
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