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1V8F
Biol. Unit 1
Info
Asym.Unit (110 KB)
Biol.Unit 1 (105 KB)
Biol.Unit 2 (207 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PANTOATE-BETA-ALANINE (PANTOTHENATE SYNTHETASE) FROM THERMUS THERMOPHILUS HB8
Authors
:
B. Bagautdinov, T. H. Tahirov, Riken Structural Genomics/Proteomi Initiative (Rsgi)
Date
:
08 Jan 04 (Deposition) - 20 Jan 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A,B (2x)
Keywords
:
Ligase, Rossmann Fold, Dimer, Structural Genomics, Riken Structural Genomics/Proteomics Initiative, Rsgi
(Keyword Search:
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Reference
:
B. Bagautdinov, T. H. Tahirov
Crystal Structure Of Pantothenate Synthetase From Thermus Thermophilus Hb8
To Be Published
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Hetero Components
(3, 10)
Info
All Hetero Components
1a: TRIS-HYDROXYMETHYL-METHYL-AMMONIUM (144a)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
2e: CHLORIDE ION (CLe)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
3f: GLYCEROL (GOLf)
3g: GLYCEROL (GOLg)
3h: GLYCEROL (GOLh)
4a: HEXAETHYLENE GLYCOL (P6Ga)
View:
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Label:
No.
Name
Count
Type
Full Name
1
144
1
Ligand/Ion
TRIS-HYDROXYMETHYL-METHYL-AMMONIUM
2
CL
-1
Ligand/Ion
CHLORIDE ION
3
GOL
8
Ligand/Ion
GLYCEROL
4
P6G
1
Ligand/Ion
HEXAETHYLENE GLYCOL
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
MET A:25 , GLN A:56 , ARG A:117 , HIS A:120 , ARG A:183
BINDING SITE FOR RESIDUE CL A 1301
02
AC2
SOFTWARE
MET B:25 , GLN B:56 , ARG B:117 , HIS B:120 , ARG B:183 , HOH B:1613
BINDING SITE FOR RESIDUE CL B 1302
03
AC3
SOFTWARE
GLY A:58 , PRO A:59 , GLY A:60
BINDING SITE FOR RESIDUE CL A 1303
04
AC4
SOFTWARE
MET B:25 , HIS B:32
BINDING SITE FOR RESIDUE CL B 1304
05
AC5
SOFTWARE
MET A:25 , HIS A:32 , 144 A:1501 , HOH A:1966
BINDING SITE FOR RESIDUE CL A 1305
06
AC6
SOFTWARE
MET A:25 , GLN A:56 , VAL A:127 , GLN A:149 , CL A:1305 , HOH A:1602 , HOH A:1752 , HOH A:1966
BINDING SITE FOR RESIDUE 144 A 1501
07
AC7
SOFTWARE
ARG A:2 , VAL A:4 , ALA A:13 , PHE A:45 , LYS A:194 , GLU A:231 , ARG A:233 , HOH A:1873 , HOH A:1888
BINDING SITE FOR RESIDUE P6G A 1601
08
AC8
SOFTWARE
PRO B:23 , GLN B:56 , VAL B:127 , GLN B:149 , HOH B:1441
BINDING SITE FOR RESIDUE GOL B 1401
09
AC9
SOFTWARE
GLU A:61 , ASP A:62 , ARG A:183 , ARG A:262 , ARG A:267 , HOH A:1608 , HOH A:1824
BINDING SITE FOR RESIDUE GOL A 1402
10
BC1
SOFTWARE
SER A:214
BINDING SITE FOR RESIDUE GOL A 1403
11
BC2
SOFTWARE
THR A:109 , GLY A:114 , GLY A:119 , HOH A:1604 , HOH A:1610 , HOH A:1666 , GLU B:105
BINDING SITE FOR RESIDUE GOL A 1404
12
BC3
SOFTWARE
THR A:6 , GLU A:92 , HOH A:1745 , HOH A:1934 , HOH A:2036
BINDING SITE FOR RESIDUE GOL A 1405
13
BC4
SOFTWARE
ALA A:99 , ARG A:101 , ALA A:115 , PRO A:118 , HOH A:1666 , HOH A:1846 , GLU B:105 , GLY B:106
BINDING SITE FOR RESIDUE GOL A 1406
14
BC5
SOFTWARE
HOH A:1733 , HIS B:241 , THR B:244 , VAL B:252 , HOH B:1497
BINDING SITE FOR RESIDUE GOL B 1407
15
BC6
SOFTWARE
GLY A:31 , HIS A:32 , LEU A:35 , PRO A:170 , THR A:171 , VAL A:172 , HOH A:1699 , HOH A:1707 , HOH A:1830 , HOH A:1871
BINDING SITE FOR RESIDUE GOL A 1408
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1v8fa_ (A:)
1b: SCOP_d1v8fb_ (B:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Adenine nucleotide alpha hydrolase-like
(440)
Superfamily
:
Nucleotidylyl transferase
(325)
Family
:
Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
(46)
Protein domain
:
Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
(44)
Thermus thermophilus [TaxId: 274]
(2)
1a
d1v8fa_
A:
1b
d1v8fb_
B:
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1v8fA02 (A:174-272)
1b: CATH_1v8fB02 (B:174-272)
2a: CATH_1v8fA01 (A:2-173)
2b: CATH_1v8fB01 (B:2-173)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Pantoate--beta-alanine Ligase; Chain: A,domain 2
(43)
Homologous Superfamily
:
[code=3.30.1300.10, no name defined]
(36)
Thermus thermophilus. Organism_taxid: 274.
(2)
1a
1v8fA02
A:174-272
1b
1v8fB02
B:174-272
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Tyrosyl-Transfer RNA Synthetase , subunit E, domain 1
(328)
Thermus thermophilus. Organism_taxid: 274.
(11)
2a
1v8fA01
A:2-173
2b
1v8fB01
B:2-173
[
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Pantoate_ligase_1v8fB01 (B:1-274)
1b: PFAM_Pantoate_ligase_1v8fB02 (B:1-274)
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Clan
:
HUP
(230)
Family
:
Pantoate_ligase
(16)
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
(2)
1a
Pantoate_ligase-1v8fB01
B:1-274
1b
Pantoate_ligase-1v8fB02
B:1-274
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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