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1V8F
Asym. Unit
Info
Asym.Unit (110 KB)
Biol.Unit 1 (105 KB)
Biol.Unit 2 (207 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PANTOATE-BETA-ALANINE (PANTOTHENATE SYNTHETASE) FROM THERMUS THERMOPHILUS HB8
Authors
:
B. Bagautdinov, T. H. Tahirov, Riken Structural Genomics/Proteomi Initiative (Rsgi)
Date
:
08 Jan 04 (Deposition) - 20 Jan 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A,B (2x)
Keywords
:
Ligase, Rossmann Fold, Dimer, Structural Genomics, Riken Structural Genomics/Proteomics Initiative, Rsgi
(Keyword Search:
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Reference
:
B. Bagautdinov, T. H. Tahirov
Crystal Structure Of Pantothenate Synthetase From Thermus Thermophilus Hb8
To Be Published
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Hetero Components
(4, 15)
Info
All Hetero Components
1a: TRIS-HYDROXYMETHYL-METHYL-AMMONIUM (144a)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
2e: CHLORIDE ION (CLe)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
3f: GLYCEROL (GOLf)
3g: GLYCEROL (GOLg)
3h: GLYCEROL (GOLh)
4a: HEXAETHYLENE GLYCOL (P6Ga)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
144
1
Ligand/Ion
TRIS-HYDROXYMETHYL-METHYL-AMMONIUM
2
CL
5
Ligand/Ion
CHLORIDE ION
3
GOL
8
Ligand/Ion
GLYCEROL
4
P6G
1
Ligand/Ion
HEXAETHYLENE GLYCOL
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
MET A:25 , GLN A:56 , ARG A:117 , HIS A:120 , ARG A:183
BINDING SITE FOR RESIDUE CL A 1301
02
AC2
SOFTWARE
MET B:25 , GLN B:56 , ARG B:117 , HIS B:120 , ARG B:183 , HOH B:1613
BINDING SITE FOR RESIDUE CL B 1302
03
AC3
SOFTWARE
GLY A:58 , PRO A:59 , GLY A:60
BINDING SITE FOR RESIDUE CL A 1303
04
AC4
SOFTWARE
MET B:25 , HIS B:32
BINDING SITE FOR RESIDUE CL B 1304
05
AC5
SOFTWARE
MET A:25 , HIS A:32 , 144 A:1501 , HOH A:1966
BINDING SITE FOR RESIDUE CL A 1305
06
AC6
SOFTWARE
MET A:25 , GLN A:56 , VAL A:127 , GLN A:149 , CL A:1305 , HOH A:1602 , HOH A:1752 , HOH A:1966
BINDING SITE FOR RESIDUE 144 A 1501
07
AC7
SOFTWARE
ARG A:2 , VAL A:4 , ALA A:13 , PHE A:45 , LYS A:194 , GLU A:231 , ARG A:233 , HOH A:1873 , HOH A:1888
BINDING SITE FOR RESIDUE P6G A 1601
08
AC8
SOFTWARE
PRO B:23 , GLN B:56 , VAL B:127 , GLN B:149 , HOH B:1441
BINDING SITE FOR RESIDUE GOL B 1401
09
AC9
SOFTWARE
GLU A:61 , ASP A:62 , ARG A:183 , ARG A:262 , ARG A:267 , HOH A:1608 , HOH A:1824
BINDING SITE FOR RESIDUE GOL A 1402
10
BC1
SOFTWARE
SER A:214
BINDING SITE FOR RESIDUE GOL A 1403
11
BC2
SOFTWARE
THR A:109 , GLY A:114 , GLY A:119 , HOH A:1604 , HOH A:1610 , HOH A:1666 , GLU B:105
BINDING SITE FOR RESIDUE GOL A 1404
12
BC3
SOFTWARE
THR A:6 , GLU A:92 , HOH A:1745 , HOH A:1934 , HOH A:2036
BINDING SITE FOR RESIDUE GOL A 1405
13
BC4
SOFTWARE
ALA A:99 , ARG A:101 , ALA A:115 , PRO A:118 , HOH A:1666 , HOH A:1846 , GLU B:105 , GLY B:106
BINDING SITE FOR RESIDUE GOL A 1406
14
BC5
SOFTWARE
HOH A:1733 , HIS B:241 , THR B:244 , VAL B:252 , HOH B:1497
BINDING SITE FOR RESIDUE GOL B 1407
15
BC6
SOFTWARE
GLY A:31 , HIS A:32 , LEU A:35 , PRO A:170 , THR A:171 , VAL A:172 , HOH A:1699 , HOH A:1707 , HOH A:1830 , HOH A:1871
BINDING SITE FOR RESIDUE GOL A 1408
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1v8fa_ (A:)
1b: SCOP_d1v8fb_ (B:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Adenine nucleotide alpha hydrolase-like
(440)
Superfamily
:
Nucleotidylyl transferase
(325)
Family
:
Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
(46)
Protein domain
:
Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
(44)
Thermus thermophilus [TaxId: 274]
(2)
1a
d1v8fa_
A:
1b
d1v8fb_
B:
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1v8fA02 (A:174-272)
1b: CATH_1v8fB02 (B:174-272)
2a: CATH_1v8fA01 (A:2-173)
2b: CATH_1v8fB01 (B:2-173)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Pantoate--beta-alanine Ligase; Chain: A,domain 2
(43)
Homologous Superfamily
:
[code=3.30.1300.10, no name defined]
(36)
Thermus thermophilus. Organism_taxid: 274.
(2)
1a
1v8fA02
A:174-272
1b
1v8fB02
B:174-272
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Tyrosyl-Transfer RNA Synthetase , subunit E, domain 1
(328)
Thermus thermophilus. Organism_taxid: 274.
(11)
2a
1v8fA01
A:2-173
2b
1v8fB01
B:2-173
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Pantoate_ligase_1v8fB01 (B:1-274)
1b: PFAM_Pantoate_ligase_1v8fB02 (B:1-274)
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Clan
:
HUP
(230)
Family
:
Pantoate_ligase
(16)
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
(2)
1a
Pantoate_ligase-1v8fB01
B:1-274
1b
Pantoate_ligase-1v8fB02
B:1-274
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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