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1V82
Asym. Unit
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Asym.Unit (92 KB)
Biol.Unit 1 (88 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN GLCAT-P APO FORM
Authors
:
S. Kakuda, T. Shiba, M. Ishiguro, H. Tagawa, S. Oka, Y. Kajihara, T. Kawasaki, S. Wakatsuki, R. Kato
Date
:
27 Dec 03 (Deposition) - 25 May 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.85
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Transferase, Glycoprotein, Glycocyltransferase, Hnk-1 Epitope
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Kakuda, T. Shiba, M. Ishiguro, H. Tagawa, S. Oka, Y. Kajihara, T. Kawasaki, S. Wakatsuki, R. Kato
Structural Basis For Acceptor Substrate Recognition Of A Human Glucuronyltransferase, Glcat-P, An Enzyme Critical In The Biosynthesis Of The Carbohydrate Epitope Hnk-1
J. Biol. Chem. V. 279 22693 2004
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: L(+)-TARTARIC ACID (TLAa)
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No.
Name
Count
Type
Full Name
1
TLA
1
Ligand/Ion
L(+)-TARTARIC ACID
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:231 , ARG A:240 , TRP A:241 , HIS A:248 , HOH A:618 , ARG B:213 , ARG B:263 , GLN B:267 , HOH B:536
BINDING SITE FOR RESIDUE TLA A 500
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_044538 (A131T, chain A/B, )
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_044538
A
131
T
B3GA1_HUMAN
Polymorphism
35434644
A/B
A
131
T
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
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Sorry, no Info available
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Exons
(3, 6)
Info
All Exons
Exon 1.4c (A:83-207 (gaps) | B:82-207 (gaps))
Exon 1.5 (A:208-306 | B:208-306)
Exon 1.6 (A:307-334 | B:307-334)
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All Exon Boundaries
1: Boundary 1.3d/1.4c
2: Boundary 1.4c/1.5
3: Boundary 1.5/1.6
4: Boundary 1.6/1.8b
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000392580
1
ENSE00000999945
chr11:
134281812-134281701
112
B3GA1_HUMAN
-
0
0
-
-
1.3b
ENST00000392580
3b
ENSE00001512424
chr11:
134257834-134257721
114
B3GA1_HUMAN
-
0
0
-
-
1.3d
ENST00000392580
3d
ENSE00001512423
chr11:
134257588-134257442
147
B3GA1_HUMAN
1-38
38
0
-
-
1.4c
ENST00000392580
4c
ENSE00000749062
chr11:
134254082-134253574
509
B3GA1_HUMAN
38-207
170
2
A:83-207 (gaps)
B:82-207 (gaps)
125
126
1.5
ENST00000392580
5
ENSE00000749063
chr11:
134252900-134252604
297
B3GA1_HUMAN
208-306
99
2
A:208-306
B:208-306
99
99
1.6
ENST00000392580
6
ENSE00000800138
chr11:
134251918-134251818
101
B3GA1_HUMAN
307-334
28
2
A:307-334
B:307-334
28
28
1.8b
ENST00000392580
8b
ENSE00001387274
chr11:
134250641-134248400
2242
B3GA1_HUMAN
-
0
0
-
-
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1v82a_ (A:)
1b: SCOP_d1v82b_ (B:)
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Protein Domains
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Nucleotide-diphospho-sugar transferases
(408)
Superfamily
:
Nucleotide-diphospho-sugar transferases
(408)
Family
:
1,3-glucuronyltransferase
(7)
Protein domain
:
Beta-1,3-glucuronyltransferase 1, GlcAT-P
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d1v82a_
A:
1b
d1v82b_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1v82A00 (A:83-334)
1b: CATH_1v82B00 (B:82-334)
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)
(
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Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A
(231)
Homologous Superfamily
:
Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A
(231)
Human (Homo sapiens)
(73)
1a
1v82A00
A:83-334
1b
1v82B00
B:82-334
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Glyco_transf_43_1v82B01 (B:105-316)
1b: PFAM_Glyco_transf_43_1v82B02 (B:105-316)
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Clan
:
GT-A
(172)
Family
:
Glyco_transf_43
(4)
Homo sapiens (Human)
(4)
1a
Glyco_transf_43-1v82B01
B:105-316
1b
Glyco_transf_43-1v82B02
B:105-316
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Asymmetric Unit 1
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