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1V6G
Asym. Unit
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Asym.Unit (392 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF THE LIM DOMAIN OF THE HUMAN ACTIN BINDING LIM PROTEIN 2
Authors
:
K. Miyamoto, T. Tomizawa, S. Koshiba, M. Inoue, T. Kigawa, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
29 Nov 03 (Deposition) - 01 Jun 04 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Lim Domain, Zinc Binding Domain, Actin Binding Lim Protein 2, Ablim2, Structural Genomics, Riken Structural Genomics/Proteomics Initiative, Rsgi, Metal Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Miyamoto, T. Tomizawa, S. Koshiba, M. Inoue, T. Kigawa, S. Yokoyama
Solution Structure Of The Lim Domain Of The Human Actin Binding Lim Protein 2
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ZN
2
Ligand/Ion
ZINC ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:18 , CYS A:21 , HIS A:38 , CYS A:41
BINDING SITE FOR RESIDUE ZN A 201
2
AC2
SOFTWARE
CYS A:44 , CYS A:47 , CYS A:66 , CYS A:69
BINDING SITE FOR RESIDUE ZN A 401
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: LIM_DOMAIN_2 (-|A:17-75|-|-)
2: LIM_DOMAIN_1 (-|A:18-51|-|-)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LIM_DOMAIN_2
PS50023
LIM domain profile.
ABLM2_HUMAN
22-81
82-141
151-210
211-270
1
-
A:17-75
-
-
2
LIM_DOMAIN_1
PS00478
LIM zinc-binding domain signature.
ABLM2_HUMAN
24-57
83-116
153-187
212-245
1
-
A:18-51
-
-
[
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Exons
(2, 2)
Info
All Exons
Exon 1.3 (A:1-48 (gaps))
Exon 1.4 (A:48-81 (gaps))
View:
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All Exon Boundaries
1: Boundary 1.2/1.3
2: Boundary 1.3/1.4
3: Boundary 1.4/1.5
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1d
ENST00000341937
1d
ENSE00002025557
chr4:
8160481-8160407
75
ABLM2_HUMAN
1-4
4
0
-
-
1.2
ENST00000341937
2
ENSE00001798266
chr4:
8108364-8108221
144
ABLM2_HUMAN
4-52
49
0
-
-
1.3
ENST00000341937
3
ENSE00001651357
chr4:
8099009-8098826
184
ABLM2_HUMAN
52-113
62
1
A:1-48 (gaps)
60
1.4
ENST00000341937
4
ENSE00001645970
chr4:
8090011-8089896
116
ABLM2_HUMAN
113-152
40
1
A:48-81 (gaps)
37
1.5
ENST00000341937
5
ENSE00001741599
chr4:
8082529-8082403
127
ABLM2_HUMAN
152-194
43
0
-
-
1.6
ENST00000341937
6
ENSE00001673927
chr4:
8079448-8079355
94
ABLM2_HUMAN
194-225
32
0
-
-
1.8
ENST00000341937
8
ENSE00001735996
chr4:
8062781-8062694
88
ABLM2_HUMAN
226-255
30
0
-
-
1.9
ENST00000341937
9
ENSE00001080335
chr4:
8055973-8055915
59
ABLM2_HUMAN
255-274
20
0
-
-
1.10
ENST00000341937
10
ENSE00001080338
chr4:
8046968-8046891
78
ABLM2_HUMAN
275-300
26
0
-
-
1.12
ENST00000341937
12
ENSE00001080331
chr4:
8038022-8037876
147
ABLM2_HUMAN
301-349
49
0
-
-
1.14
ENST00000341937
14
ENSE00001080332
chr4:
8031503-8031383
121
ABLM2_HUMAN
350-390
41
0
-
-
1.16d
ENST00000341937
16d
ENSE00001337667
chr4:
8022030-8021929
102
ABLM2_HUMAN
390-424
35
0
-
-
1.17
ENST00000341937
17
ENSE00001136408
chr4:
8021398-8021345
54
ABLM2_HUMAN
424-442
19
0
-
-
1.19
ENST00000341937
19
ENSE00001136400
chr4:
8010829-8010777
53
ABLM2_HUMAN
442-459
18
0
-
-
1.20e
ENST00000341937
20e
ENSE00001492451
chr4:
8009924-8009786
139
ABLM2_HUMAN
460-506
47
0
-
-
1.21
ENST00000341937
21
ENSE00001278544
chr4:
7994654-7994593
62
ABLM2_HUMAN
506-526
21
0
-
-
1.22
ENST00000341937
22
ENSE00001278537
chr4:
7986620-7986566
55
ABLM2_HUMAN
527-545
19
0
-
-
1.23
ENST00000341937
23
ENSE00001772276
chr4:
7985281-7985274
8
ABLM2_HUMAN
545-547
3
0
-
-
1.24b
ENST00000341937
24b
ENSE00001278486
chr4:
7985071-7984991
81
ABLM2_HUMAN
548-574
27
0
-
-
1.25c
ENST00000341937
25c
ENSE00002068146
chr4:
7968830-7968029
802
ABLM2_HUMAN
575-611
37
0
-
-
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1v6ga1 (A:1-41)
1b: SCOP_d1v6ga2 (A:42-81)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
Small proteins
(3458)
Fold
:
Glucocorticoid receptor-like (DNA-binding domain)
(292)
Superfamily
:
Glucocorticoid receptor-like (DNA-binding domain)
(292)
Family
:
LIM domain
(37)
Protein domain
:
Actin-binding LIM protein 2, abLIM2
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1v6ga1
A:1-41
1b
d1v6ga2
A:42-81
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_LIM_1v6gA01 (A:18-72)
1b: PFAM_LIM_1v6gA02 (A:18-72)
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(
)
Clan
:
no clan defined [family: LIM]
(23)
Family
:
LIM
(23)
Homo sapiens (Human)
(18)
1a
LIM-1v6gA01
A:18-72
1b
LIM-1v6gA02
A:18-72
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Chain A
Asymmetric Unit 1
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