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Asym. Unit
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Asym.Unit (84 KB)
Biol.Unit 1 (304 KB)
Biol.Unit 2 (608 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE HUMAN DMC1 PROTEIN
Authors
:
T. Kinebuchi, W. Kagawa, R. Enomoto, S. Ikawa, T. Shibata, H. Kurumizak S. Yokoyama, Riken Structural Genomics/Proteomics Initiative
Date
:
26 Nov 03 (Deposition) - 18 May 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.20
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (4x)
Biol. Unit 2: A,B (8x)
Keywords
:
Dna-Binding Protein, Ring Protein, Octamer, Aaa Atpase, Riken Structural Genomics/Proteomics Initiative, Rsgi, Structural Genomics, Recombination
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Kinebuchi, W. Kagawa, R. Enomoto, K. Tanaka, K. Miyagawa, T. Shibata, H. Kurumizaka, S. Yokoyama
Structural Basis For Octameric Ring Formation And Dna Interaction Of The Human Homologous-Pairing Protein Dmc1
Mol. Cell V. 14 363 2004
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Hetero Components
(0, 0)
Info
All Hetero Components
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Label:
Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
View:
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Label:
Sorry, no Info available
[
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]
SAPs(SNPs)/Variants
(2, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_061757 (G150D, chain A/B, )
2: VAR_018960 (M200V, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_061757
G
150
D
DMC1_HUMAN
Polymorphism
58396845
A/B
G
150
D
2
UniProt
VAR_018960
M
200
V
DMC1_HUMAN
Polymorphism
2227914
A/B
M
200
V
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: RECA_2 (A:97-270,B:97-270)
2: RECA_3 (A:290-340,B:290-340)
;
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RECA_2
PS50162
RecA family profile 1.
DMC1_HUMAN
97-270
2
A:97-270
B:97-270
2
RECA_3
PS50163
RecA family profile 2.
DMC1_HUMAN
277-340
2
A:290-340
B:290-340
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Exons
(10, 20)
Info
All Exons
Exon 1.6 (A:83-109 | B:83-109)
Exon 1.7 (A:109-127 | B:109-127)
Exon 1.8b (A:127-141 | B:127-141)
Exon 1.9a (A:141-165 | B:141-165)
Exon 1.10 (A:165-196 | B:165-196)
Exon 1.11 (A:196-220 | B:196-220)
Exon 1.12 (A:221-259 | B:221-259)
Exon 1.13 (A:259-270 | B:259-270)
Exon 1.14 (A:290-318 | B:290-318)
Exon 1.15b (A:318-340 | B:318-340)
View:
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All Exon Boundaries
01: Boundary 1.5/1.6
02: Boundary 1.6/1.7
03: Boundary 1.7/1.8b
04: Boundary 1.8b/1.9a
05: Boundary 1.9a/1.10
06: Boundary 1.10/1.11
07: Boundary 1.11/1.12
08: Boundary 1.12/1.13
09: Boundary 1.13/1.14
10: Boundary 1.14/1.15b
11: Boundary 1.15b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000216024
1a
ENSE00001948236
chr22:
38966291-38966048
244
DMC1_HUMAN
-
0
0
-
-
1.3b
ENST00000216024
3b
ENSE00002166141
chr22:
38964294-38964211
84
DMC1_HUMAN
1-17
17
0
-
-
1.4
ENST00000216024
4
ENSE00000880297
chr22:
38963632-38963588
45
DMC1_HUMAN
18-32
15
0
-
-
1.5
ENST00000216024
5
ENSE00000654388
chr22:
38962741-38962595
147
DMC1_HUMAN
33-81
49
0
-
-
1.6
ENST00000216024
6
ENSE00000654385
chr22:
38958374-38958292
83
DMC1_HUMAN
82-109
28
2
A:83-109
B:83-109
27
27
1.7
ENST00000216024
7
ENSE00000654384
chr22:
38951414-38951362
53
DMC1_HUMAN
109-127
19
2
A:109-127
B:109-127
19
19
1.8b
ENST00000216024
8b
ENSE00000654383
chr22:
38948712-38948671
42
DMC1_HUMAN
127-141
15
2
A:127-141
B:127-141
15
15
1.9a
ENST00000216024
9a
ENSE00000654382
chr22:
38946002-38945930
73
DMC1_HUMAN
141-165
25
2
A:141-165
B:141-165
25
25
1.10
ENST00000216024
10
ENSE00000654381
chr22:
38935417-38935326
92
DMC1_HUMAN
165-196
32
2
A:165-196
B:165-196
32
32
1.11
ENST00000216024
11
ENSE00000654379
chr22:
38934617-38934544
74
DMC1_HUMAN
196-220
25
2
A:196-220
B:196-220
25
25
1.12
ENST00000216024
12
ENSE00002152839
chr22:
38934414-38934300
115
DMC1_HUMAN
221-259
39
2
A:221-259
B:221-259
39
39
1.13
ENST00000216024
13
ENSE00000654377
chr22:
38933657-38933597
61
DMC1_HUMAN
259-279
21
2
A:259-270
B:259-270
12
12
1.14
ENST00000216024
14
ENSE00000654376
chr22:
38917729-38917613
117
DMC1_HUMAN
279-318
40
2
A:290-318
B:290-318
29
29
1.15b
ENST00000216024
15b
ENSE00001204821
chr22:
38916094-38914954
1141
DMC1_HUMAN
318-340
23
2
A:318-340
B:318-340
23
23
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1v5wa_ (A:)
1b: SCOP_d1v5wb_ (B:)
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Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
RecA protein-like (ATPase-domain)
(159)
Protein domain
:
Meiotic recombination protein DMC1/LIM15 homolog
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1v5wa_
A:
1b
d1v5wb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1v5wA00 (A:83-340)
1b: CATH_1v5wB00 (B:83-340)
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(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Human (Homo sapiens)
(413)
1a
1v5wA00
A:83-340
1b
1v5wB00
B:83-340
[
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Rad51_1v5wB01 (B:83-339)
1b: PFAM_Rad51_1v5wB02 (B:83-339)
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(
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)
(
)
Clan
:
P-loop_NTPase
(1112)
Family
:
Rad51
(10)
Homo sapiens (Human)
(3)
1a
Rad51-1v5wB01
B:83-339
1b
Rad51-1v5wB02
B:83-339
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