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Asym. Unit
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Asym.Unit (530 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF RSGI RUH-008, FN3 DOMAIN IN HUMAN CDNA
Authors
:
Y. Doi-Katayama, F. Hayashi, H. Hirota, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
25 Nov 03 (Deposition) - 25 May 04 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Fn3 Domain, Human Cdna, Structural Genomics, Riken Structural Genomics/Proteomics Initiative, Rsgi, Cell Adhesion
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Doi-Katayama, F. Hayashi, H. Hirota, S. Yokoyama
Solution Structure Of Rsgi Ruh-008, A Fn3 Domain In Human Cdna
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available in "Model" view)
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View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: FN3 (-|A:8-102)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FN3
PS50853
Fibronectin type-III domain profile.
TUTLA_HUMAN
507-611
623-718
1
-
A:8-102
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Exons
(4, 4)
Info
All Exons
Exon 1.13 (A:1-7 (gaps))
Exon 1.14a (A:7-72 (gaps))
Exon 1.14c (A:73-101)
Exon 1.15a (A:101-108 (gaps))
View:
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All Exon Boundaries
1: Boundary 1.12/1.13
2: Boundary 1.13/1.14a
3: Boundary 1.14a/1.14c
4: Boundary 1.14c/1.15a
5: Boundary 1.15a/1.16a
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000368094
1b
ENSE00001329537
chr1:
159915386-159915363
24
TUTLA_HUMAN
-
0
0
-
-
1.2
ENST00000368094
2
ENSE00002175139
chr1:
159913418-159913187
232
TUTLA_HUMAN
1-20
20
0
-
-
1.3
ENST00000368094
3
ENSE00000904974
chr1:
159912941-159912753
189
TUTLA_HUMAN
20-83
64
0
-
-
1.4
ENST00000368094
4
ENSE00000904973
chr1:
159907628-159907476
153
TUTLA_HUMAN
83-134
52
0
-
-
1.5
ENST00000368094
5
ENSE00000904972
chr1:
159906698-159906544
155
TUTLA_HUMAN
134-185
52
0
-
-
1.6
ENST00000368094
6
ENSE00000904971
chr1:
159906306-159906189
118
TUTLA_HUMAN
186-225
40
0
-
-
1.7
ENST00000368094
7
ENSE00000904970
chr1:
159904612-159904471
142
TUTLA_HUMAN
225-272
48
0
-
-
1.8
ENST00000368094
8
ENSE00000904969
chr1:
159904360-159904215
146
TUTLA_HUMAN
272-321
50
0
-
-
1.9a
ENST00000368094
9a
ENSE00000904968
chr1:
159904122-159903980
143
TUTLA_HUMAN
321-368
48
0
-
-
1.10b
ENST00000368094
10b
ENSE00000904967
chr1:
159902442-159902302
141
TUTLA_HUMAN
369-415
47
0
-
-
1.11c
ENST00000368094
11c
ENSE00000904966
chr1:
159901718-159901602
117
TUTLA_HUMAN
416-454
39
0
-
-
1.11d
ENST00000368094
11d
ENSE00000904965
chr1:
159901393-159901243
151
TUTLA_HUMAN
455-505
51
0
-
-
1.12
ENST00000368094
12
ENSE00000904964
chr1:
159901051-159900928
124
TUTLA_HUMAN
505-546
42
0
-
-
1.13
ENST00000368094
13
ENSE00001231012
chr1:
159900657-159900482
176
TUTLA_HUMAN
546-605
60
1
A:1-7 (gaps)
15
1.14a
ENST00000368094
14a
ENSE00001231002
chr1:
159900229-159899979
251
TUTLA_HUMAN
605-688
84
1
A:7-72 (gaps)
84
1.14c
ENST00000368094
14c
ENSE00001067998
chr1:
159899765-159899681
85
TUTLA_HUMAN
689-717
29
1
A:73-101
29
1.15a
ENST00000368094
15a
ENSE00001230986
chr1:
159899604-159899428
177
TUTLA_HUMAN
717-776
60
1
A:101-108 (gaps)
22
1.16a
ENST00000368094
16a
ENSE00001231083
chr1:
159899183-159899141
43
TUTLA_HUMAN
776-790
15
0
-
-
1.16c
ENST00000368094
16c
ENSE00001067981
chr1:
159898808-159897948
861
TUTLA_HUMAN
790-1077
288
0
-
-
1.17
ENST00000368094
17
ENSE00001040401
chr1:
159897677-159897550
128
TUTLA_HUMAN
1077-1120
44
0
-
-
1.18b
ENST00000368094
18b
ENSE00001231076
chr1:
159897316-159896829
488
TUTLA_HUMAN
1120-1179
60
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1v5ja_ (A:)
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Protein Domains
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Organisms
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)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Fibronectin type III
(212)
Family
:
Fibronectin type III
(180)
Protein domain
:
KIAA1355
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1v5ja_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1v5jA00 (A:1-108)
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Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Human (Homo sapiens)
(912)
1a
1v5jA00
A:1-108
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_fn3_1v5jA01 (A:9-92)
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Clan
:
E-set
(290)
Family
:
fn3
(66)
Homo sapiens (Human)
(52)
1a
fn3-1v5jA01
A:9-92
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Asymmetric Unit 1
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