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1V5I
Asym. Unit
Info
Asym.Unit (67 KB)
Biol.Unit 1 (62 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF SERINE PROTEASE INHIBITOR POIA1 IN COMPLEX WITH SUBTILISIN BPN'
Authors
:
W. C. Lee, M. Kikkawa, S. Kojima, K. Miura, M. Tanokura
Date
:
24 Nov 03 (Deposition) - 08 Mar 05 (Release) - 12 Nov 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Protease-Inhibitor Complex, Poia1, Subtilisin, Hydrolase-Protein Binding Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
W. C. Lee, M. Kikkawa, S. Kojima, K. Miura, M. Tanokura
Crystal Structure Of Serine Protease Inhibitor Poia1 In Complex With Subtilisin Bpn'
To Be Published
[
close entry info
]
Hetero Components
(4, 20)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
2a: 3-SULFINOALANINE (CSDa)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
3f: GLYCEROL (GOLf)
3g: GLYCEROL (GOLg)
3h: GLYCEROL (GOLh)
3i: GLYCEROL (GOLi)
3j: GLYCEROL (GOLj)
3k: GLYCEROL (GOLk)
3l: GLYCEROL (GOLl)
3m: GLYCEROL (GOLm)
3n: GLYCEROL (GOLn)
3o: GLYCEROL (GOLo)
3p: GLYCEROL (GOLp)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
1
Ligand/Ion
CALCIUM ION
2
CSD
1
Mod. Amino Acid
3-SULFINOALANINE
3
GOL
16
Ligand/Ion
GLYCEROL
4
SO4
2
Ligand/Ion
SULFATE ION
[
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]
Sites
(19, 19)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PRO A:5 , TYR A:6 , HOH A:3138 , HOH A:3158 , HOH A:3208 , HOH A:3257
BINDING SITE FOR RESIDUE SO4 A 1001
02
AC2
SOFTWARE
ASN A:109 , ASN B:34 , GLU B:35 , HOH B:2046 , HOH B:2065 , HOH B:2067 , HOH B:2076 , HOH B:2092
BINDING SITE FOR RESIDUE SO4 B 1002
03
AC3
SOFTWARE
GLN A:2 , ASP A:41 , LEU A:75 , ASN A:77 , ILE A:79 , VAL A:81
BINDING SITE FOR RESIDUE CA A 3001
04
AC4
SOFTWARE
ASN A:62 , SER A:63 , HIS A:64 , TYR A:217 , GLN A:245 , SER A:249 , GLN A:275 , HOH A:3173 , HOH A:3254
BINDING SITE FOR RESIDUE GOL A 2001
05
AC5
SOFTWARE
GOL A:2018 , LYS B:17 , THR B:21 , GLU B:24 , LYS B:55 , LEU B:63
BINDING SITE FOR RESIDUE GOL B 2002
06
AC6
SOFTWARE
GOL A:2010 , GLU B:24 , GLU B:28 , GLN B:51 , SER B:52 , LYS B:55 , HOH B:2051
BINDING SITE FOR RESIDUE GOL A 2003
07
AC7
SOFTWARE
LYS B:10 , ASN B:11
BINDING SITE FOR RESIDUE GOL B 2004
08
AC8
SOFTWARE
ASP A:181 , ALA A:187 , SER A:188 , VAL A:203 , HOH A:3290
BINDING SITE FOR RESIDUE GOL A 2005
09
AC9
SOFTWARE
PRO A:129 , SER A:130 , HOH A:3027 , HIS B:71 , VAL B:72
BINDING SITE FOR RESIDUE GOL A 2006
10
BC1
SOFTWARE
TYR A:6 , ASP A:181 , SER A:182 , HOH A:3282
BINDING SITE FOR RESIDUE GOL A 2007
11
BC2
SOFTWARE
ASN A:118 , MET A:119 , GLY A:146 , HOH A:3190 , HOH A:3271 , HOH A:3272
BINDING SITE FOR RESIDUE GOL A 2008
12
BC3
SOFTWARE
ALA A:48 , TRP A:113 , HOH A:3023 , HOH A:3137
BINDING SITE FOR RESIDUE GOL A 2009
13
BC4
SOFTWARE
SER A:38 , PRO A:40 , GOL A:2003 , GOL A:2018 , HOH A:3167 , GLU B:24 , GLU B:28 , LYS B:55 , HOH B:2078
BINDING SITE FOR RESIDUE GOL A 2010
14
BC5
SOFTWARE
ALA A:1 , GLY A:80 , TYR A:214 , HOH A:3191
BINDING SITE FOR RESIDUE GOL A 2011
15
BC6
SOFTWARE
LYS A:141 , ALA A:144 , HOH A:3141 , HOH A:3224 , HOH A:3237 , HOH A:3292 , HOH A:3293
BINDING SITE FOR RESIDUE GOL A 2012
16
BC7
SOFTWARE
PRO A:172 , SER A:173 , HOH A:3088 , HOH A:3276
BINDING SITE FOR RESIDUE GOL A 2013
17
BC8
SOFTWARE
SER B:14 , LYS B:17 , HOH B:2100
BINDING SITE FOR RESIDUE GOL B 2014
18
BC9
SOFTWARE
VAL A:143 , ALA A:144 , SER A:145 , GLY A:146 , ASN A:243 , HOH A:3018 , HOH A:3219 , HOH A:3294
BINDING SITE FOR RESIDUE GOL A 2016
19
CC1
SOFTWARE
SER A:38 , PRO A:40 , GOL A:2010 , HOH A:3010 , HOH A:3242 , HOH A:3281 , HOH A:3318 , GOL B:2002
BINDING SITE FOR RESIDUE GOL A 2018
[
close Site info
]
SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_SUBT_BACAM_001 (Y21F, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_SUBT_BACAM_001
*
Y
128
F
SUBT_BACAM
---
---
A
Y
21
F
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: SUBTILASE_ASP (A:28-39)
2: SUBTILASE_HIS (A:64-74)
3: SUBTILASE_SER (A:219-229)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SUBTILASE_ASP
PS00136
Serine proteases, subtilase family, aspartic acid active site.
SUBT_BACAM
135-146
1
A:28-39
2
SUBTILASE_HIS
PS00137
Serine proteases, subtilase family, histidine active site.
SUBT_BACAM
171-181
1
A:64-74
3
SUBTILASE_SER
PS00138
Serine proteases, subtilase family, serine active site.
SUBT_BACAM
326-336
1
A:219-229
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1v5ib1 (B:1-72)
2a: SCOP_d1v5ia_ (A:)
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Classes
(
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Folds
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
Protease propeptides/inhibitors
(19)
Family
:
Subtilase propeptides/inhibitors
(8)
Protein domain
:
Proteinase A inhibitor 1, POIA1
(2)
Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]
(2)
1a
d1v5ib1
B:1-72
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Subtilisin-like
(227)
Superfamily
:
Subtilisin-like
(227)
Family
:
Subtilases
(190)
Protein domain
:
automated matches
(58)
Bacillus amyloliquefaciens [TaxId: 1390]
(2)
2a
d1v5ia_
A:
[
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]
CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_1v5iB00 (B:1-76)
2a: CATH_1v5iA00 (A:1-275)
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)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Alpha-Beta Plaits
(1688)
Homologous Superfamily
:
[code=3.30.70.80, no name defined]
(8)
Bacillus amyloliquefaciens. Organism_taxid: 1390.
(2)
1a
1v5iB00
B:1-76
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.200, no name defined]
(198)
Bacillus amyloliquefaciens. Organism_taxid: 1390.
(8)
2a
1v5iA00
A:1-275
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Atom Selection
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Asymmetric Unit 1
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